undefined references - linker

I'm trying to compile some fortran code and I'm running into some confusing linking errors. I have some code that I compile and place into a static library:
>gfortran -c -I../../inc -o bdout.o bdout.F
>ar rv libgeo.a bdout.o
I then try to compile against that library with some simple test code and get the following:
>gfortran -o mytest -L -lgeo mytest.F
/tmp/cc4uvcsj.o: In function `MAIN__':
mytest.F:(.text+0xb0): undefined reference to `ncwrite1_'
collect2: ld returned 1 exit status
It's not in the object naming because everything looks fine:
>nm -u libgeo.a
bdout.o:
U _gfortran_exit_i4
U _gfortran_st_write
U _gfortran_st_write_done
U _gfortran_transfer_character
U _gfortran_transfer_integer
U ncobjcl_
U ncobjwrp_
U ncopencr_
U ncopenshcr_
U ncopenwr_
U ncwrite1_
U ncwrite2_
U ncwrite3_
U ncwrite4_
U ncwritev_
I can check the original object file too:
>nm -u bdout.o
U _gfortran_exit_i4
U _gfortran_st_write
U _gfortran_st_write_done
U _gfortran_transfer_character
U _gfortran_transfer_integer
U ncobjcl_
U ncobjwrp_
U ncopencr_
U ncopenshcr_
U ncopenwr_
U ncwrite1_
U ncwrite2_
U ncwrite3_
U ncwrite4_
U ncwritev_
The test code simply contains a single call to a function defined in bdout.o:
program hello
print *,"Hello World!"
call ncwrite1( istat, f, ix2, ix3, ix4, ix5, ih )
end program hello
I can't figure out what the problem is. Does anyone have any suggestions? Maybe even just a way to track the problem down?
Cheers.

Don't know if this helps this particular issue, but generally, always put the linker commands AFTER the object files. Secondly, if libgeo.a is in the current directory, you need to add that explicitly, an empty -L AFAIK does nothing. I.e.
gfortran -o mytest mytest.F -L. -lgeo
EDIT: Also note that the "U" in the nm output means that the symbol is undefined. I.e. that the .o file references said symbol, but the symbol is actually in some other file. I.e. you might need to explicitly link in the library that defines the ncwrite1_ symbol.

The problem is that you're not linking against the library that contains that function. There are two possible reasons for this:
The ncwrite1 function isn't defined in the libraries that you are linking against. Use nm to verify that this is (or is not) the case.
The libraries are placed before the object/source code files on the command line(!) Linkers are quite the most stupid things ever, and do not attempt to resolve everything against everything else (and this is occasionally useful for advanced techniques) but that means you need to put the libraries after everything else. If you have many libraries, you need to use a topological sort on the dependencies between them to determine the correct order to list them to the linker.
If we assume that the geo library has the function you're after (check that!) then you should build and link like this:
gfortran -o mytest -L. mytest.F -lgeo

The problem may be that the call to ncwrite1 does not match the signature of the library definition of the subroutine and what the error message is really trying to tell you is that it can't find a version of ncwrite1 with a signature to match the call. Your program doesn't seem to use an explicit interface to ncwrite1 so type errors like this won't be caught at compile-time.

First, thanks to everyone who answered. I'm posting to put an official end to this thread. It turns out that the person who wrote the library (libgeo.a) had placed several #ifdef statements in the code that were turned on using compiler flag macros -D(macro). These #ifdef's would then be used to expand the function names with specific parameters. Without supplying the appropriate macros to the compiler the function names were left unexpanded, and The symbols were thus undefined. Grrrr...

Related

'Undefined reference to function' issue even after linking the library which has the defination

I am trying to create an executable with .o ,.so, .a files.
Here is my build command:-
pkgs/gcc/v4.8.3/bin/gcc -L/usr/X11R6/lib -O2 -DUSE_FLEX -Wall -Wno-char-subscripts -fPIC -DLINUX -DG_DISABLE_CONST_RETURNS -fno-strict-aliasing -o ../build/kl/Release/test/bin/pure.exe -L../build/kl/Release/test/modules ../build/kl/Release/test/maker/constrfunc.TCL.o ../../build/kl/Release/test/maker/pvdbprocs.TCL.o .. ../build/kl/Release/test/maker/maker/memmaker.TCL.o .. ../build/kl/Release/test/maker/modules/libdenbase.a .. ../build/kl/Release/test/maker/guibase.o -litk3.2 -litcl4.0.0 -ltk8.3 -lcdnviptcl8.4 -litclstub4.0.0 -ldenbase -lglib-2.0 -ldenbase -lX11 -ldl -lm -lviputil -lvippli -lcdsCommonMT_sh -lpthread -L/home/dlb/extlibs/arm/lib
I have libraries which have definitions of the functions at path "-L/home/dlb/extlibs/arm/lib" . Still it is throwing error below.
Error:
../build/kl/Release/test/maker/guibase.o: In function `decodeAddrList':
tree234.c:(.text+0xc): undefined reference to `ptritclStubsPtr'
tree234.c:(.text+0x20): undefined reference to `ptrlitclStubsPtr'
tree234.c:(.text+0x12c): undefined reference to `ptrlitclStubsPtr'
tree234.c:(.text+0x140): undefined reference to `ptrlitclStubsPtr'
I have the symbol in library which is at path /home/dlb/extlibs/arm/lib :-
Command:-
readelf -s libitcl4.0.0.so | grep ptrlitclStubsPtr
348: 0000000000060f10 8 OBJECT LOCAL DEFAULT 24 ptrlitclStubsPtr
Am I missing some thing here?
Note, OP has provided more info in a repost of the same question;
quote from comment by OP:
"Due to some privacy issues...I am renaming the symbols.. It was edited by me... It was typo...I just corrected it...:)"
I.e. the identifiers in the error message and the grep line and the output of the grep line have been manually altered.
It looks like the functions you're asking about are local to the file where they were defined. That is, it looks like they were explicitly intended not (and not even allowed) to be called externally.
That is, somewhere within the source for the shared library libitcl4.0.0.so probably appears a declaration like:
static tclStubs *ptrlitclStubsPtr;
That keyword static indicates that the visibility of the resulting symbol ptrlitclStubsPtr is confined to its own source file.
I infer all of this from the fact that your reported readelf output includes the line
348: 0000000000060f10 8 OBJECT LOCAL DEFAULT 24 ptrlitclStubsPtr
That flag LOCAL indicates that the symbol is local. If it were global, intended (and able) to be called externally, the flag GLOBAL would appear instead.
Why are variables made private (static) like this, so you can't use them? It's a software engineering thing, "information hiding", intended to reduce the "width" of the interface between you and a library like libitcl4. Symbols that are private are more intimately tied to the implementation decisions within libitcl4, decisions which are not supposed to be visible to, or any concern of, the callers. It's thought that, if callers were to have access to those symbols, callers would also have to know other implementation details, meaning that the author of libitcl4 would then be unable to change those implementation details without breaking (invalidating) the calling code. So to prevent that situation, the choice is usually made to make it impossible for the caller to become dependent in this way.
In this situation you basically have three paths forward:
Remove the static tags from the variable declarations in the sources to libitcl4.0.0.so. (This obviously requires that you have access to the sources to libitcl4.0.0.so, and the ability to rebuild it. It's also probably a very bad idea. As I've explained, those symbols were probably made static for a good reason.)
Add a new function within libitcl4.0.0.so which does whatever you need done, and which, by virtue of its placement within the same source file, does have access to those symbols. (This, too, requires that you have access to and the ability to rebuild ``libitcl4.0.0.so`.)
Find some other way of doing whatever you need done, using the existing public facilities of libitcl4.0.0.so.

Linking shared libraries with gcc on Linux

I need to compile and, most importantly, link a C program that uses a proprietary function present in a shared library file. Because of lack of communication with the previous development team, there is no proper documentation. I declared a function prototype (because I know the number and type of arguments):
int CustomFunction(unsigned char *in, int size);
Since that function name can be grepped from /customlibs/libcustom.so, I tried to compile the code and link it like this:
gcc -L/customlibs testing.c -o testing -lcustom
Which throws a few error messages looking like this:
/customlibs/libcustom.so: undefined reference to `AnotherCustomFunction'
Obviously, I need to tell linker to include other libraries as well, and, to make things worse, they need to be in certain order. I tried exporting LD_LIBRARY_PATH, using -Wl,-rpath=, -Wl,--no-undefined and -Wl,--start-group. Is there an easy way to give the linker all the .so files without the proper order?
I found the solution (or a workaround) to my problem: adding -Wl,--warn-unresolved-symbols, which turns errors to warnings. Note that this works only if you are ABSOLUTELY certain your function does not depend on the symbols mentioned in undefined refernce to: messages.
Add them on the command line is a way to do it. Something like this below. The LD_LIBRARY_PATH tells gcc where to look for libraries, but you still need to say what libraries to include.
gcc -L/customlibs testing.c -o testing -lcustom -lmylib1 -lmylib2 -lmylib3
You should also include all the header files of your shared library by adding the -I option of gcc, for example : gcc [...] -I/path/to/your/lib/header/files [...]

gsoap client compile/link error

Now I am writing a program to call a web service. I write testMain.c. The others are generated by wsdl2h and soapcpp2.
My compiling command is like this:
gcc -Wall -g -c -L. soapC.c soapClient.c stdsoap2.c testMain.c
gcc -o testMain -L/usr/lib -lgsoap -lgsoapck -lgsoapssl soapC.o soapClient.o stdsoap2.o testMain.o
And I get these errors. Please help me.
stdsoap2.o: In function `soap_print_fault':
/test/stdsoap2.c:16279: undefined reference to `soap_check_faultsubcode'
/test/stdsoap2.c:16281: undefined reference to `soap_check_faultdetail'
stdsoap2.o: In function `soap_sprint_fault':
/test/stdsoap2.c:16341: undefined reference to `soap_check_faultdetail'
collect2: ld returned 1 exit status
Recent versions of GCC/ld/the GNU toolchain require that the object and library files be specified in a certain order, so that symbols can be found by the linker in the same order they depend on each other. This means that libraries should go to the end of the command line; your second line (when you're linking) should be
gcc -o testMain -L/usr/lib soapC.o soapClient.o stdsoap2.o testMain.o -lgsoap -lgsoapck -lgsoapssl
instead.
I search the web, and found a post which is very similar with my problem. I use this solution and have solved the problem. http://www.mail-archive.com/gsoap#yahoogroups.com/msg01022.html
You should not need to link stdsoap2.o to your project because it's already included in libgsoap (given through the gcc linker option -lgsoap). Try to exclude stdsoap2.c from your project. From the gSOAP FAQ:
I get a link error with gcc/g++ (GNU GCC). What should I do? For C
apps: use soapcpp2 option -c to generate C code, use only the
package's .c files, link with libgsoap.a (-lgsoap) or use the lib's
source stdsoap2.c (and dom.c when applicable).
I had the same problem with gsoap-2.8.16 compiled from source. (That version was shipped with CentOS 6.)
First I checked for a missing library. According to nm used on all static libraries provided by gsoap-2.8.16:
for X in /usr/local/lib/libgsoap*.a ; do echo $X; nm $X | grep soap_check_faultdetail; done`
it turned out that none of the libraries provided the missing symbols.
A brief look at the source code revealed that the expected return type of both methods soap_check_faultdetail and soap_check_faultsubcode was const char*, and that these were used to generate error messages.
It looked to me as if these are meant to be callbacks that the client must provide. Maybe their implementation is WSDL-dependent and would be supplied by the gsoap code generation utilities - that I don't know, see the answer from #ChristianAmmer above or below.
Anyway, since I knew the symbols were nowhere supplied, and that null-terminated strings were probably acceptable here, I just supplied my own no-op implementation:
// gsoap-missing-symbols.cpp
extern "C" {
const char* soap_check_faultdetail() { return 0; }
const char* soap_check_faultsubcode() { return 0; }
}
This is a brute-force solution. If you follow this solution, you should maybe check for linker warnings in the future; maybe some mechanism (eg. from the gsoap code generator) will supply conflicting implementations later during development.
For later versions of gsoap, I believe these symbols are no longer used and can be dropped (or renamed), see soap_check_faultX in https://www.genivia.com/changelog.html.

expect - c program

I am trying to compile a program written in c using the expect.h header. I am trying this:
cc -I/usr/include main.c -lexpect -ltcl
cc -I/usr/include main.c
I tried the same with gcc, but to no avail.
I get this:
undefined reference to `exp_spawnl'
undefined reference to `exp_expectl'
Any ideas?
Thanks,
Walter
It means that regardless of what you thought was being used, the expect library being used does not contain those two functions. So, you need to track down which expect library is actually loaded, and then check whether the functions are in it (they aren't, but you should check to see what is defined).
Once you've found your library, you can use nm -g libexpect.so to see the symbols defined. I would expect that you will not see exp_spawnl or exp_expectl in the list of defined symbols.
Then you need to find out which version of the library you do have, and decide whether to upgrade, etc.
I am assuming that the names you quote are indeed spelled correctly.
Is the expect header file installed in /usr/include?
I think the undefined reference error comes from the linker and not the compiler. What directory is the library installed to? Try to link against it using the
-L/path/to/lib -lexpect
option

how do I always include symbols from a static library?

Suppose I have a static library libx.a. How to I make some symbols (not all) from this library to be always present in any binary I link with my library? Reason is that I need these symbols to be available via dlopen+dlsym. I'm aware of --whole-archive linker switch, but it forces all object files from library archive to linked into resulting binary, and that is not what I want...
Observations so far (CentOS 5.4, 32bit) (upd: this paragraph is wrong; I could not reproduce this behaviour)
ld main.o libx.a
will happily strip all non-referenced symbols, while
ld main.o -L. -lx
will link whole library in. I guess this depends on version of binutils used, however, and newer linkers will be able to cherry-pick individual objects from a static library.
Another question is how can I achieve the same effect under Windows?
Thanks in advance. Any hints will be greatly appreciated.
Imagine you have a project which consists of the following three C files in the same folder;
// ---- jam.h
int jam_badger(int);
// ---- jam.c
#include "jam.h"
int jam_badger(int a)
{
return a + 1;
}
// ---- main.c
#include "jam.h"
int main()
{
return jam_badger(2);
}
And you build it with a boost-build bjam file like this;
lib jam : jam.c <link>static ;
lib jam_badger : jam ;
exe demo : jam_badger main.c ;
You will get an error like this.
undefined reference to `jam_badger'
(I have used bjam here because the file is easier to read, but you could use anything you want)
Removing the 'static' produces a working binary, as does adding static to the other library, or just using the one library (rather than the silly wrapping on inside the other)
The reason this happens is because ld is clever enough to only select the parts of the archive which are actually used, which in this case is none of them.
The solution is to surround the static archives with -Wl,--whole-archive and -Wl,--no-whole-archive, like so;
g++ -o "libjam_candle_badger.so" -Wl,--whole-archive libjam_badger.a Wl,--no-whole-archive
Not quite sure how to get boost-build to do this for you, but you get the idea.
First things first: ld main.o libx.a does not build a valid executable. In general, you should never use ld to link anything directly; always use proper compiler driver (gcc in this case) instead.
Also, "ld main.o libx.a" and "ld main.o -L. -lx" should be exactly equivalent. I am very doubtful you actually got different results from these two commands.
Now to answer your question: if you want foo, bar and baz to be exported from your a.out, do this:
gcc -Wl,-u,foo,-u,bar,-u,baz main.o -L. -lx -rdynamic
Update:
your statement: "symbols I want to include are used by library internally only" doesn't make much sense: if the symbols are internal to the library, why do you want to export them? And if something else uses them (via dlsym), then they are not internal to the library -- they are part of the library public API.
You should clarify your question and explain what you really are trying to achieve. Providing sample code will not hurt either.
I would start with splitting off those symbols you always need into a seperate library, retaining only the optional ones in libx.a.
Take an address of the symbol you need to include.
If gcc's optimiser anyway eliminates it, do something with this address - should be enough.

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