I am trying to use the amazon sagemaker lab environment and the package libXrender is not installed.
sudo privileges are removed and it's not possible to install it with:
apt-get install libxrender1
Is there an easy fix or do I have to contact their support to install the package in their docker container?
Thanks in advance!
Error results from this piece of code:
from rdkit.Chem.Draw import rdMolDraw2D
from rdkit.Chem.Draw.rdMolDraw2D import *
ImportError: libXrender.so.1: cannot open shared object file: No such file or directory
No problem in installing rdkit. The problem crops up when trying to call one of its visualisation functions rdkit.Chem.Draw.rdMolDraw2D - MolDraw2D requires the help of a rendering library to display the molecules in 2D.
Yes, sudo privileges are not available in Studio Lab. Your best bet is to find a different library that you can install without sudo privileges.
You can also try - conda install -c conda-forge rdki
If you want to use rdkit, we can install it by conda install -c conda-forge rdkit in Studio Lab.
Related
When I ran the unetStack package in ubuntu18.04, an error was occurred. The error information is "Native library yoda_phy_pa_amd64 not found".
I have install the java environment correctly. And I saw the lib related to yoda_phy_pa_amd64 in unet3.0.0/lib dir named with libyoda_phy_pa_amd64.so. I copy the file to usr/lib and usr/local/lib, it still not works and show the same error information "Native library yoda_phy_pa_amd64 not found".
Install java environment, sudo apt-get install openjdk-8-jre
Obtain the authority of the dir, sudo chmod 777 -R unet-3.0.0
Run the audio demo, bin/unet audio
I expect the audio demo will be work, and show the GUI in the browser. I have successfully run the demo in another computer with ubuntu16.04. But I don't know why it does not works.
This is probably because of a missing dependency for the native library that is used for UnetAudio. UnetAudio requires portaudio as a dependency.
You will need to install portaudio separately using sudo apt-get install portaudio-dev on Ubuntu or using MacPorts or Homebrew on macOS.
This package worked for me!
sudo apt-get install portaudio19-dev python-pyaudio
I'm trying to connect to the Microsoft SQL server.
I'm using python code to do so, and I want to download pyodbc.
I go to the Python33 directory by doing this: cd C:\Python33\, and I try typing in pip install pyodbc, but it doesn't recognize pip.
Did anyone else have this problem with Python 3.3?
I'm also trying to do this:
C:\Python34\Scripts>pip install pyodbc
But it says: "The system cannot find the path specified."
Pip is a stand-alone tool, you will have to install that as well in 3.3. Here is a link on a really good explanation:
(How do I install pip on Windows?)
In 3.4, pip was included, but you will have to call it with
python -m pip
inside your scripts directory
I wrote so many thing in requirements.txt and reinstalled but it didn't work out. I installed odoo 9.0 source code for windows. The command prompt is showing error:
from pychart import *
What do I need to write in requirements.txt for pychart?
As i just ran into the same problem unrelated to odoo.
The following command solved it for me:
pip install Python-Chart
To install the python packages for odoo you can use below command found from this detailed odoo install guide
cd /tmp && wget https://raw.githubusercontent.com/odoo/odoo/9.0/requirements.txt && sudo pip install -r requirements.txt
It will install all the python dependacy in just one command.
Hope this helps.
You have to install that package before you use that, If are on ubuntu command is pip install pychart and if you are on windows the command is c:\Python27\Scripts\pip.exe install pychart.I assume you have installed python on default folder c drive.
Why don't you create a module like install_module and on depends you can add required list of module to install. If you install that module it'll automatically install all depended module. I'm using this same. Instead of command prompt it'll be quite easy too. You can view the depends module list in Technical Data of that install_modules.
I Hope it'll be helpful.
I am trying to install imu_tools package into rosdep in ubuntu. After I set the ROS_PACKAGE_PATH, it says "Missing Resources cmake_modules". Does that mean I have to get the directory of cmake and include it in the ROS_PACKAGE_PATH? Is there anything else that I need to do to make it work?
sudo apt-get install ros-<your_ros_distro>-cmake-modules
solved it for me
I tried to install generator-angularjs using Yo (Yoeman) without sudo:
npm install -g generator-angular
I get:
Error: EACCES, mkdir '/usr/lib/node_modules/generator-angular'
When I type in sudo yo, yo tells me that I should not use sudo (which is perfectly understandable).
I have a ~/node_modules directory - why doesn't yo install its packages there?
Generators are designed to be installed globally. Otherwise, you always have to install the generator you're about to use in each project, which is unnecessarily painful. Also, you don't get to see the lovely yo menu which lists you all the available generators (unless of course, you install them all locally):
Setting up npm for global installation
So, how do we get npm to install packages globally? As you correctly said, you should never, ever run yo with sudo. There are lots of different solutions to this problem and you can spend hours discussing their pros and cons religiously.
I personally dislike installing my user packages into the global /usr/ folder. /usr/ is for software that is shared across all users on the computer. Even if it's only using the machine, there are still good reasons to respect the way the Unix file system hierarchy is designed. For example if you decide at one point to wipe your whole node installation.
My preferred way of enabling npm to install packages globally without breaking out of $HOME is to set a local node prefix. This is as easy as running
echo 'prefix = ~/.node' >> ~/.npmrc
in your local shell. After that, you want to adjust your $PATH, to point to the new installation destination for global node executables by adjusting your favorite shell's config. E.g. by adding
export PATH="$PATH:$HOME/.node/bin"
to your ~/.bashrc. After that, you can happily run npm install -g generator-angular without sudo, without running into permission conflicts and if something is completely broken and you want to start from scratch, all you need to do is remove your ~/.node directory.
Thanks to #passy I managed to finally get this working on ubuntu 13.04 (in case anyone is having similar set up issues) with the following :
sudo apt-get update
sudo apt-get install python-software-properties python g++ make
sudo add-apt-repository ppa:chris-lea/node.js
sudo apt-get update
sudo apt-get install nodejs
trying to run:
npm install -g yo
resulted in
Error: EACCES, mkdir '/usr/lib/node_modules/yo'
Fixed using:
echo prefix = ~/.node >> ~/.npmrc
echo 'export PATH=$HOME/.node/bin:$PATH' >> ~/.bashrc
. ~/.bashrc
Running:
yo webapp
resulted in:
Error: EACCES, permission denied '/home/username/.config/configstore/update-notifier-yo.yml'
Fixed using:
sudo chown yourusername:yourusername /home/yourusername/.config/configstore/update-notifier-yo.yml
hi in my case (on ubuntu 12.04), the prefix addition in ~/.npmrc did not changed anything.
if so, build the node package by yourself and install it in /opt/node or /home/user/.node.
I had an almost identical error involving a rogue .yo-rc.json file in my root directory from a project I installed earlier. Yeoman was switching cwd from the installation dir to root dir half way through the installation, but was only outputting the EACCESS permissions error without any details that the installation directory was /. It took ages to figure out why this was, and involved debugging through the Yeoman source, but I eventually learned that Yeoman will look up through the directory tree until it finds a .yo-rc.json, and generate the code there by calling chdir to the new location.
Yeoman should maybe check that the user has write permissions for the directory. Alternatively, it could mention in the output either that the cwd has changed, or print the name of the installation directory if where it finds .yo-rc.json is different than cwd.
The command for finding rogue .yo-rc.json files
sudo find / -name .yo-rc.json
From yoeman getting started page appears the command:
yo doctor
In my case, $NODE_PATH (which in my case, Ubuntu 14.04, is defined in /etc/profile.d) isn't the same than npm root. Adding in npm root in $NODE_PATH solve the problem.
I have been trying to get yeoman to play nice with my vagrant box and this is what I had to do to install npm packages globally without sudo on ubuntu:
1. Create the directory to store global packages
$ mkdir "${HOME}/.npm-packages"
2. Tell npm where to put any packages installed globally
Insert this snippet into your ~/.npmrc file:
prefix=${HOME}/.npm-packages
3. Make sure that npm can locate installed binaries et cetera
Insert this snippet into your .bashrc/.zshrc:
NPM_PACKAGES="${HOME}/.npm-packages"
PATH="$NPM_PACKAGES/bin:$PATH"
// `unset` `manpath` to allow inheritance from `/etc/manpath` with
// the `manpath` command
unset MANPATH // remove this line if you have previously modified `manpath`
export MANPATH="$NPM_PACKAGES/share/man:$(manpath)"
4. Run the following or restart terminal
$ source ~/.bashrc
Hope this helps anyone who finds themselves in a similar situation.