What data is held in the operating system's file descriptors? - file

I've been working with assembly and have been working with file IO. From what I've learned, the process goes as follows. CPU makes a system call to the kernel to open a file ie "hello.txt". The kernel then finds that location in the filesystem (persistent memory), makes it accessible for read and/or write, and returns a file descriptor that uniquely identifies that file. From my understanding the file descriptor is an index for a table that stores file data. My question is: what data is stored? presumably storing the entire file data would get grossly memory expense for large files. Does it store file metadata like mime-type, encoding, etc? Or does it actually store the whole contents?

Related

Will file system be corrupted on raw disk modification?

Some OSs allow programs to edit raw disk, bypassing the file system. If I'm wrong(ie only raw read is allowed, not raw write), please correct me.
If I'm correct, then what will happen if a program modifies a raw disk, modifying some blocks, but not updating the disk tables(free block list, FAT etc)? Will the file system auto update it or notify the program, get corrupted, or something else?
For example, if nothing is done, the file system may write a new file to the blocks containing those data thinking that they are currently free(if the free block list is not updated by the program).

How is file overlap avoided in UNIX/Linux?

If I create a file and my OS starts that file at some memory address on some disk, but I end up writing so much data to my file that the file descriptor is moved into the disk space of the next file on the same disk, does the OS have a way of protecting the file that I am at risk of overwriting? And if so what does UNIX/Linux do in particular?
Typically the OS prevents contents of different files from overlapping by allowing the contents of a file to be stored in non-contiguous regions of disk. Growing a file past the free region will simply cause the file to include a non-adjacent region of disk. When the disk is sufficiently full, this causes the infamous fragmentation.
Note that user-space code is never allowed to directly access on-disk addresses of file contents. The file descriptor offset as returned by lseek is not an on-disk address, but a virtual offset that the OS can translated to the actual address. The fact that addresses are hidden from user code means that file contents may also be moved to other locations on disk to optimize storage.
Read up on filesystems for more information on this topic.

Memory Mapped I/O in Unix

I am unable to understand how files are managed in memory mapped I/O. As normal If we open a file using open or fopen, it returns fd or
file pointer respectively. After this open where the file resides for processing. It is in memory(copy of the file which is in hard disk) or not? If it
is not in memory where the data is fetch by consequent read or write system call or It fetchs data from the hard disk for each time of calling read or write.
Otherwise the copy of the file is stored in memory and the file is accessed by process for furthur manipulation and once the process is completed the file is copied to hard disk. In the above concepts
which scenario is worked ?
The following is the definition given for memory mapped i/o in Advanced Programming in Unix Environment(2nd Edition) book:
Memory-mapped I/O lets us map a file on disk into a buffer in memory so that, when we fetch bytes from the buffer, the corresponding bytes of the file are read. Similarly, when we store data in the buffer, the corresponding bytes are automatically written to the file. This lets us perform I/O without using read or write.
what is mapping a file into memory? And here, they defined the memory is placed in between stack and heap. In this memory, what
type of data is present after mapping a file. It contains copy of the file or the address of the file which resides in hard disk. And
how the above scenario becomes true.
Does anyone explain the working mechanism of memory mapped I/O and mmap functionality?
Normally when you open a file, the system sets up some bookkeeping structures (metadata) but does not need to read any part of the actual data of the file. When you call read(), the system loads a chunk of the file into (virtual) memory which you allocated for the purpose.
When you memory-map a file, the system again sets up bookkeeping, and also sets up a (virtual) memory "mapping" which means a range of valid addresses which, if used, will reflect reads (or writes) of the underlying file. It does not mean the entire file needs to be read at once, because it can be "paged in" on demand, i.e. the system can give you an address range to use, then wait for you to actually use it before loading any data there. This "page faulting" is supported by a hardware device called the Memory Management Unit, or MMU. The same system is used when you run an executable file--the system can simply map it into virtual memory and read pages (chunks) from disk only as needed.
It is in memory(copy of the file which is in hard disk) or not?
According to Computer Programming and Utilization, When you open file with fopen its content are loaded into memory. (Partially or wholly).
If it is not in memory where the data is fetch by consequent read or
write system call
When you fwrite some data, it is eventually copied into the kernel which will then write it to disk (or wherever) after buffering. In general, no part of a file needs to be loaded in order to write.
what is mapping a file into memory?
For more refer here
In this memory, what type of data is present after mapping a file. It
contains copy of the file or the address of the file which resides in
hard disk.
A memory-mapped file is a segment of virtual memory which has been assigned a direct byte-for-byte correlation with some portion of a file or file-like resource.Refer this
It is possible to mmap a file to a region of memory. When this is done, the file can be accessed just like an array in the program.This is more efficient than read or write, as only the regions of the file that a program actually accesses are loaded. Accesses to not-yet-loaded parts of the mmapped region are handled in the same way as swapped out pages.
After this open where the file resides for processing. It is in memory(copy of the file which is in hard disk) or not?
On the disk. It may also be partly or completely in memory if the operating system does a read-ahead, but that isn't detectable by you. You still have to issue reads to get data from the file.
If it is not in memory where the data is fetch by consequent read or write system call
From the disk.
or It fetchs data from the hard disk for each time of calling read or write.
In effect, but you also have to consider the effect of any caching.
Otherwise the copy of the file is stored in memory and the file is accessed by process for furthur manipulation and once the process is completed the file is copied to hard disk.
No. The file behaves as though it is all on the disk.
And here, they defined the memory is placed in between stack and heap.
Not in what you quoted.
In this memory, what type of data is present after mapping a file.
The data in the file. The question 'what type of data' doesn't make sense. Data is data.
It contains copy of the file or the address of the file which resides in hard disk.
It effectively contains a copy of the file.
And how the above scenario becomes true.
Via virtual memory. Too broad to cover here.

What does opening a file actually do?

In all programming languages (that I use at least), you must open a file before you can read or write to it.
But what does this open operation actually do?
Manual pages for typical functions dont actually tell you anything other than it 'opens a file for reading/writing':
http://www.cplusplus.com/reference/cstdio/fopen/
https://docs.python.org/3/library/functions.html#open
Obviously, through usage of the function you can tell it involves creation of some kind of object which facilitates accessing a file.
Another way of putting this would be, if I were to implement an open function, what would it need to do on Linux?
In almost every high-level language, the function that opens a file is a wrapper around the corresponding kernel system call. It may do other fancy stuff as well, but in contemporary operating systems, opening a file must always go through the kernel.
This is why the arguments of the fopen library function, or Python's open closely resemble the arguments of the open(2) system call.
In addition to opening the file, these functions usually set up a buffer that will be consequently used with the read/write operations. The purpose of this buffer is to ensure that whenever you want to read N bytes, the corresponding library call will return N bytes, regardless of whether the calls to the underlying system calls return less.
I am not actually interested in implementing my own function; just in understanding what the hell is going on...'beyond the language' if you like.
In Unix-like operating systems, a successful call to open returns a "file descriptor" which is merely an integer in the context of the user process. This descriptor is consequently passed to any call that interacts with the opened file, and after calling close on it, the descriptor becomes invalid.
It is important to note that the call to open acts like a validation point at which various checks are made. If not all of the conditions are met, the call fails by returning -1 instead of the descriptor, and the kind of error is indicated in errno. The essential checks are:
Whether the file exists;
Whether the calling process is privileged to open this file in the specified mode. This is determined by matching the file permissions, owner ID and group ID to the respective ID's of the calling process.
In the context of the kernel, there has to be some kind of mapping between the process' file descriptors and the physically opened files. The internal data structure that is mapped to the descriptor may contain yet another buffer that deals with block-based devices, or an internal pointer that points to the current read/write position.
I'd suggest you take a look at this guide through a simplified version of the open() system call. It uses the following code snippet, which is representative of what happens behind the scenes when you open a file.
0 int sys_open(const char *filename, int flags, int mode) {
1 char *tmp = getname(filename);
2 int fd = get_unused_fd();
3 struct file *f = filp_open(tmp, flags, mode);
4 fd_install(fd, f);
5 putname(tmp);
6 return fd;
7 }
Briefly, here's what that code does, line by line:
Allocate a block of kernel-controlled memory and copy the filename into it from user-controlled memory.
Pick an unused file descriptor, which you can think of as an integer index into a growable list of currently open files. Each process has its own such list, though it's maintained by the kernel; your code can't access it directly. An entry in the list contains whatever information the underlying filesystem will use to pull bytes off the disk, such as inode number, process permissions, open flags, and so on.
The filp_open function has the implementation
struct file *filp_open(const char *filename, int flags, int mode) {
struct nameidata nd;
open_namei(filename, flags, mode, &nd);
return dentry_open(nd.dentry, nd.mnt, flags);
}
which does two things:
Use the filesystem to look up the inode (or more generally, whatever sort of internal identifier the filesystem uses) corresponding to the filename or path that was passed in.
Create a struct file with the essential information about the inode and return it. This struct becomes the entry in that list of open files that I mentioned earlier.
Store ("install") the returned struct into the process's list of open files.
Free the allocated block of kernel-controlled memory.
Return the file descriptor, which can then be passed to file operation functions like read(), write(), and close(). Each of these will hand off control to the kernel, which can use the file descriptor to look up the corresponding file pointer in the process's list, and use the information in that file pointer to actually perform the reading, writing, or closing.
If you're feeling ambitious, you can compare this simplified example to the implementation of the open() system call in the Linux kernel, a function called do_sys_open(). You shouldn't have any trouble finding the similarities.
Of course, this is only the "top layer" of what happens when you call open() - or more precisely, it's the highest-level piece of kernel code that gets invoked in the process of opening a file. A high-level programming language might add additional layers on top of this. There's a lot that goes on at lower levels. (Thanks to Ruslan and pjc50 for explaining.) Roughly, from top to bottom:
open_namei() and dentry_open() invoke filesystem code, which is also part of the kernel, to access metadata and content for files and directories. The filesystem reads raw bytes from the disk and interprets those byte patterns as a tree of files and directories.
The filesystem uses the block device layer, again part of the kernel, to obtain those raw bytes from the drive. (Fun fact: Linux lets you access raw data from the block device layer using /dev/sda and the like.)
The block device layer invokes a storage device driver, which is also kernel code, to translate from a medium-level instruction like "read sector X" to individual input/output instructions in machine code. There are several types of storage device drivers, including IDE, (S)ATA, SCSI, Firewire, and so on, corresponding to the different communication standards that a drive could use. (Note that the naming is a mess.)
The I/O instructions use the built-in capabilities of the processor chip and the motherboard controller to send and receive electrical signals on the wire going to the physical drive. This is hardware, not software.
On the other end of the wire, the disk's firmware (embedded control code) interprets the electrical signals to spin the platters and move the heads (HDD), or read a flash ROM cell (SSD), or whatever is necessary to access data on that type of storage device.
This may also be somewhat incorrect due to caching. :-P Seriously though, there are many details that I've left out - a person (not me) could write multiple books describing how this whole process works. But that should give you an idea.
Any file system or operating system you want to talk about is fine by me. Nice!
On a ZX Spectrum, initializing a LOAD command will put the system into a tight loop, reading the Audio In line.
Start-of-data is indicated by a constant tone, and after that a sequence of long/short pulses follow, where a short pulse is for a binary 0 and a longer one for a binary 1 (https://en.wikipedia.org/wiki/ZX_Spectrum_software). The tight load loop gathers bits until it fills a byte (8 bits), stores this into memory, increases the memory pointer, then loops back to scan for more bits.
Typically, the first thing a loader would read is a short, fixed format header, indicating at least the number of bytes to expect, and possibly additional information such as file name, file type and loading address. After reading this short header, the program could decide whether to continue loading the main bulk of the data, or exit the loading routine and display an appropriate message for the user.
An End-of-file state could be recognized by receiving as many bytes as expected (either a fixed number of bytes, hardwired in the software, or a variable number such as indicated in a header). An error was thrown if the loading loop did not receive a pulse in the expected frequency range for a certain amount of time.
A little background on this answer
The procedure described loads data from a regular audio tape - hence the need to scan Audio In (it connected with a standard plug to tape recorders). A LOAD command is technically the same as open a file - but it's physically tied to actually loading the file. This is because the tape recorder is not controlled by the computer, and you cannot (successfully) open a file but not load it.
The "tight loop" is mentioned because (1) the CPU, a Z80-A (if memory serves), was really slow: 3.5 MHz, and (2) the Spectrum had no internal clock! That means that it had to accurately keep count of the T-states (instruction times) for every. single. instruction. inside that loop, just to maintain the accurate beep timing.
Fortunately, that low CPU speed had the distinct advantage that you could calculate the number of cycles on a piece of paper, and thus the real world time that they would take.
It depends on the operating system what exactly happens when you open a file. Below I describe what happens in Linux as it gives you an idea what happens when you open a file and you could check the source code if you are interested in more detail. I am not covering permissions as it would make this answer too long.
In Linux every file is recognised by a structure called inode. Each structure has an unique number and every file only gets one inode number. This structure stores meta data for a file, for example file-size, file-permissions, time stamps and pointer to disk blocks, however, not the actual file name itself. Each file (and directory) contains a file name entry and the inode number for lookup. When you open a file, assuming you have the relevant permissions, a file descriptor is created using the unique inode number associated with file name. As many processes/applications can point to the same file, inode has a link field that maintains the total count of links to the file. If a file is present in a directory, its link count is one, if it has a hard link its link count will be two and if a file is opened by a process, the link count will be incremented by 1.
Bookkeeping, mostly. This includes various checks like "Does the file exist?" and "Do I have the permissions to open this file for writing?".
But that's all kernel stuff - unless you're implementing your own toy OS, there isn't much to delve into (if you are, have fun - it's a great learning experience). Of course, you should still learn all the possible error codes you can receive while opening a file, so that you can handle them properly - but those are usually nice little abstractions.
The most important part on the code level is that it gives you a handle to the open file, which you use for all of the other operations you do with a file. Couldn't you use the filename instead of this arbitrary handle? Well, sure - but using a handle gives you some advantages:
The system can keep track of all the files that are currently open, and prevent them from being deleted (for example).
Modern OSs are built around handles - there's tons of useful things you can do with handles, and all the different kinds of handles behave almost identically. For example, when an asynchronous I/O operation completes on a Windows file handle, the handle is signalled - this allows you to block on the handle until it's signalled, or to complete the operation entirely asynchronously. Waiting on a file handle is exactly the same as waiting on a thread handle (signalled e.g. when the thread ends), a process handle (again, signalled when the process ends), or a socket (when some asynchronous operation completes). Just as importantly, handles are owned by their respective processes, so when a process is terminated unexpectedly (or the application is poorly written), the OS knows what handles it can release.
Most operations are positional - you read from the last position in your file. By using a handle to identify a particular "opening" of a file, you can have multiple concurrent handles to the same file, each reading from their own places. In a way, the handle acts as a moveable window into the file (and a way to issue asynchronous I/O requests, which are very handy).
Handles are much smaller than file names. A handle is usually the size of a pointer, typically 4 or 8 bytes. On the other hand, filenames can have hundreds of bytes.
Handles allow the OS to move the file, even though applications have it open - the handle is still valid, and it still points to the same file, even though the file name has changed.
There's also some other tricks you can do (for example, share handles between processes to have a communication channel without using a physical file; on unix systems, files are also used for devices and various other virtual channels, so this isn't strictly necessary), but they aren't really tied to the open operation itself, so I'm not going to delve into that.
At the core of it when opening for reading nothing fancy actually needs to happen. All it needs to do is check the file exists and the application has enough privileges to read it and create a handle on which you can issue read commands to the file.
It's on those commands that actual reading will get dispatched.
The OS will often get a head start on reading by starting a read operation to fill the buffer associated with the handle. Then when you actually do the read it can return the contents of the buffer immediately rather then needing to wait on disk IO.
For opening a new file for write the OS will need to add a entry in the directory for the new (currently empty) file. And again a handle is created on which you can issue the write commands.
Basically, a call to open needs to find the file, and then record whatever it needs to so that later I/O operations can find it again. That's quite vague, but it will be true on all the operating systems I can immediately think of. The specifics vary from platform to platform. Many answers already on here talk about modern-day desktop operating systems. I've done a little programming on CP/M, so I will offer my knowledge about how it works on CP/M (MS-DOS probably works in the same way, but for security reasons, it is not normally done like this today).
On CP/M you have a thing called the FCB (as you mentioned C, you could call it a struct; it really is a 35-byte contiguous area in RAM containing various fields). The FCB has fields to write the file-name and a (4-bit) integer identifying the disk drive. Then, when you call the kernel's Open File, you pass a pointer to this struct by placing it in one of the CPU's registers. Some time later, the operating system returns with the struct slightly changed. Whatever I/O you do to this file, you pass a pointer to this struct to the system call.
What does CP/M do with this FCB? It reserves certain fields for its own use, and uses these to keep track of the file, so you had better not ever touch them from inside your program. The Open File operation searches through the table at the start of the disk for a file with the same name as what's in the FCB (the '?' wildcard character matches any character). If it finds a file, it copies some information into the FCB, including the file's physical location(s) on the disk, so that subsequent I/O calls ultimately call the BIOS which may pass these locations to the disk driver. At this level, specifics vary.
In simple terms, when you open a file you are actually requesting the operating system to load the desired file ( copy the contents of file ) from the secondary storage to ram for processing. And the reason behind this ( Loading a file ) is because you cannot process the file directly from the Hard-disk because of its extremely slow speed compared to Ram.
The open command will generate a system call which in turn copies the contents of the file from the secondary storage ( Hard-disk ) to Primary storage ( Ram ).
And we 'Close' a file because the modified contents of the file has to be reflected to the original file which is in the hard-disk. :)
Hope that helps.

Open system call

I'm studying for my operating systems midterm and was wondering if I can get some help.
Can someone explain the checks and what the kernel does during the open() system call?
Thanks!
Very roughly, you can think of the following steps:
Translate the file name into an inode, which is the actual file system object describing the contents of the file, by traversing the filesystem data structures.
During this traversal, the kernel will check that you have sufficient access through the directory path to the file, and check access on the file itself. The precise checks depend on what modes were passed to open.
Create what's sometimes called an open file descriptor within the kernel. There is one of these objects for each file the kernel has opened on behalf of any process.
Allocate an unused index in the per-process file descriptor table, and point it at the open file descriptor.
Return this index from the system call as the file descriptor.
This description should be essentially correct for opening plain files and/or directories, but things are different for various sorts of special files, in particular for devices.
I would go back to what the prof told you - there a lot of things that happen during open(), depending on what you're opening (i.e. a device, a file, a directory), and unless you write what the professor's looking for, you'll lose points.
That being said, it mostly involves the checks to see if this open is valid (i.e. does this file exist, does the user have permissions to read/write it, etc), then an entry in the kernel handle table is allocated to keep track of the fd and its current file position (and of course, some other things)

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