How to disable git hooks in gitkraken? - githooks

I'm working with a project that has git hooks configured. Unfortunately. It was added to prevent juniors or headless developers to commit CI-check-failing code to their branch.
I am one of these, who ignore git hooks with HUSKY_SKIP_HOOKS env variable, but for me it doesn't work in GitKraken.
Do you know how to ignore git hooks in GitKraken?

Well, I did receive a response from their support, that works for me.
Additionally, you should still be able to disable these hooks from executing. You will need to change the chmod permissions for the files, which reside under local_repo/.git/hooks.
chmod -x .git/hooks/*
And it works for me.

Are you using the command instruction like that HUSKY_SKIP_HOOKS=1 git <command> ...?
You can use it like HUSKY_SKIP_HOOKS=1 but also HUSKY_SKIP_HOOKS=true.
You can also bypass commit hooks in command line with : git commit -m "bla bla" -n.
If you'll be unable to run hooks for a long time, you also can use the core.hooksPath git configuration option:
git -c core.hooksPath=/dev/null checkout master
git -c core.hooksPath=/dev/null pull
git -c core.hooksPath=/dev/null commit ...
git -c core.hooksPath=/dev/null push
...
And (just sayin'), SourceTree has an interface option to skip commit hooks. As far as I know Git Kraken doesn't have one.

Sadly there doesn't seem to be a simple way to do this from the GitKraken. As others have pointed out you should pass in the Husky environmental variable normally. But here's a guaranteed simple solution that will always work. I'm currently using it to clean up some old repositories.
# Temporarily wipe husky
npm uninstall husky
# Clear out the husky package changes so we don't accidentally commit them
git reset --hard HEAD
When you're done in GitKraken re-install husky as so.
npm install

Related

how to ignore .next folder in nextjs project? [duplicate]

I put a file that was previously being tracked by Git onto the .gitignore list. However, the file still shows up in git status after it is edited. How do I force Git to completely forget the file?
.gitignore will prevent untracked files from being added (without an add -f) to the set of files tracked by Git. However, Git will continue to track any files that are already being tracked.
To stop tracking a file, we must remove it from the index:
git rm --cached <file>
To remove a folder and all files in the folder recursively:
git rm -r --cached <folder>
The removal of the file from the head revision will happen on the next commit.
WARNING: While this will not remove the physical file from your local machine, it will remove the files from other developers' machines on their next git pull.
The series of commands below will remove all of the items from the Git index (not from the working directory or local repository), and then will update the Git index, while respecting Git ignores. PS. Index = Cache
First:
git rm -r --cached .
git add .
Then:
git commit -am "Remove ignored files"
Or as a one-liner:
git rm -r --cached . && git add . && git commit -am "Remove ignored files"
git update-index does the job for me:
git update-index --assume-unchanged <file>
Note: This solution is actually independent of .gitignore as gitignore is only for untracked files.
Update, a better option
Since this answer was posted, a new option has been created and that should be preferred. You should use --skip-worktree which is for modified tracked files that the user don't want to commit anymore and keep --assume-unchanged for performance to prevent git to check status of big tracked files. See https://stackoverflow.com/a/13631525/717372 for more details...
git update-index --skip-worktree <file>
To cancel
git update-index --no-skip-worktree <file>
git ls-files -c --ignored --exclude-standard -z | xargs -0 git rm --cached
git commit -am "Remove ignored files"
This takes the list of the ignored files, removes them from the index, and commits the changes.
Move it out, commit, and then move it back in.
This has worked for me in the past, but there is probably a 'gittier' way to accomplish this.
I always use this command to remove those untracked files.
One-line, Unix-style, clean output:
git ls-files --ignored --exclude-standard | sed 's/.*/"&"/' | xargs git rm -r --cached
It lists all your ignored files, replaces every output line with a quoted line instead to handle paths with spaces inside, and passes everything to git rm -r --cached to remove the paths/files/directories from the index.
The copy/paste (one-liner) answer is:
git rm --cached -r .; git add .; git status; git commit -m "Ignore unwanted files"
This command will NOT change the content of the .gitignore file. It will just ignore the files that have already been committed to a Git repository, but now we have added them to .gitignore.
The command git status; is to review the changes and could be dropped.
Ultimately, it will immediately commit the changes with the message "Ignore unwanted files".
If you don't want to commit the changes, drop the last part of the command (git commit -m "Ignore unwanted files")
Use this when:
You want to untrack a lot of files, or
You updated your .gitignore file
Source: Untrack files already added to Git repository based on .gitignore
Let’s say you have already added/committed some files to your Git repository and you then add them to your .gitignore file; these files will still be present in your repository index. This article we will see how to get rid of them.
Step 1: Commit all your changes
Before proceeding, make sure all your changes are committed, including your .gitignore file.
Step 2: Remove everything from the repository
To clear your repository, use:
git rm -r --cached .
rm is the remove command
-r will allow recursive removal
–cached will only remove files from the index. Your files will still be there.
The rm command can be unforgiving. If you wish to try what it does beforehand, add the -n or --dry-run flag to test things out.
Step 3: Readd everything
git add .
Step 4: Commit
git commit -m ".gitignore fix"
Your repository is clean :)
Push the changes to your remote to see the changes effective there as well.
If you cannot git rm a tracked file because other people might need it (warning, even if you git rm --cached, when someone else gets this change, their files will be deleted in their filesystem). These are often done due to config file overrides, authentication credentials, etc. Please look at https://gist.github.com/1423106 for ways people have worked around the problem.
To summarize:
Have your application look for an ignored file config-overide.ini and use that over the committed file config.ini (or alternately, look for ~/.config/myapp.ini, or $MYCONFIGFILE)
Commit file config-sample.ini and ignore file config.ini, have a script or similar copy the file as necessary if necessary.
Try to use gitattributes clean/smudge magic to apply and remove the changes for you, for instance smudge the config file as a checkout from an alternate branch and clean the config file as a checkout from HEAD. This is tricky stuff, I don't recommend it for the novice user.
Keep the config file on a deploy branch dedicated to it that is never merged to master. When you want to deploy/compile/test you merge to that branch and get that file. This is essentially the smudge/clean approach except using human merge policies and extra-git modules.
Anti-recommentation: Don't use assume-unchanged, it will only end in tears (because having git lie to itself will cause bad things to happen, like your change being lost forever).
I accomplished this by using git filter-branch. The exact command I used was taken from the man page:
WARNING: this will delete the file from your entire history
git filter-branch --index-filter 'git rm --cached --ignore-unmatch filename' HEAD
This command will recreate the entire commit history, executing git rm before each commit and so will get rid of the specified file. Don't forget to back it up before running the command as it will be lost.
What didn't work for me
(Under Linux), I wanted to use the posts here suggesting the ls-files --ignored --exclude-standard | xargs git rm -r --cached approach. However, (some of) the files to be removed had an embedded newline/LF/\n in their names. Neither of the solutions:
git ls-files --ignored --exclude-standard | xargs -d"\n" git rm --cached
git ls-files --ignored --exclude-standard | sed 's/.*/"&"/' | xargs git rm -r --cached
cope with this situation (get errors about files not found).
So I offer
git ls-files -z --ignored --exclude-standard | xargs -0 git rm -r --cached
git commit -am "Remove ignored files"
This uses the -z argument to ls-files, and the -0 argument to xargs to cater safely/correctly for "nasty" characters in filenames.
In the manual page git-ls-files(1), it states:
When -z option is not used, TAB, LF, and backslash characters in
pathnames are represented as \t, \n, and \\, respectively.
so I think my solution is needed if filenames have any of these characters in them.
Do the following steps for a file/folder:
Remove a File:
need to add that file to .gitignore.
need to remove that file using the command (git rm --cached file name).
need to run (git add .).
need to (commit -m) "file removed".
and finally, (git push).
For example:
I want to delete the test.txt file. I accidentally pushed to GitHub and want to remove it. Commands will be as follows:
First, add "test.txt" in file .gitignore
git rm --cached test.txt
git add .
git commit -m "test.txt removed"
git push
Remove Folder:
need to add that folder to file .gitignore.
need to remove that folder using the command (git rm -r --cached folder name).
need to run (git add .).
need to (commit -m) "folder removed".
and finally, (git push).
For example:
I want to delete the .idea folder/directory. I accidentally pushed to GitHub and want to remove it. The commands will be as follows:
First, add .idea in file .gitignore
git rm -r --cached .idea
git add .
git commit -m ".idea removed"
git push
Update your .gitignore file – for instance, add a folder you don't want to track to .gitignore.
git rm -r --cached . – Remove all tracked files, including wanted and unwanted. Your code will be safe as long as you have saved locally.
git add . – All files will be added back in, except those in .gitignore.
Hat tip to #AkiraYamamoto for pointing us in the right direction.
Do the following steps serially, and you will be fine.
Remove the mistakenly added files from the directory/storage. You can use the "rm -r" (for Linux) command or delete them by browsing the directories. Or move them to another location on your PC. (You maybe need to close the IDE if running for moving/removing.)
Add the files / directories to the .gitignore file now and save it.
Now remove them from the Git cache by using these commands (if there is more than one directory, remove them one by one by repeatedly issuing this command)
git rm -r --cached path-to-those-files
Now do a commit and push by using the following commands. This will remove those files from Git remote and make Git stop tracking those files.
git add .
git commit -m "removed unnecessary files from Git"
git push origin
I think, that maybe Git can't totally forget about a file because of its conception (section "Snapshots, Not Differences").
This problem is absent, for example, when using CVS. CVS stores information as a list of file-based changes. Information for CVS is a set of files and the changes made to each file over time.
But in Git every time you commit, or save the state of your project, it basically takes a picture of what all your files look like at that moment and stores a reference to that snapshot. So, if you added file once, it will always be present in that snapshot.
These two articles were helpful for me:
git assume-unchanged vs skip-worktree and How to ignore changes in tracked files with Git
Basing on it I do the following, if the file is already tracked:
git update-index --skip-worktree <file>
From this moment all local changes in this file will be ignored and will not go to remote. If the file is changed on remote, conflict will occur, when git pull. Stash won't work. To resolve it, copy the file content to the safe place and follow these steps:
git update-index --no-skip-worktree <file>
git stash
git pull
The file content will be replaced by the remote content. Paste your changes from the safe place to the file and perform again:
git update-index --skip-worktree <file>
If everyone, who works with the project, will perform git update-index --skip-worktree <file>, problems with pull should be absent. This solution is OK for configurations files, when every developer has their own project configuration.
It is not very convenient to do this every time, when the file has been changed on remote, but it can protect it from overwriting by remote content.
Using the git rm --cached command does not answer the original question:
How do you force git to completely forget about [a file]?
In fact, this solution will cause the file to be deleted in every other instance of the repository when executing a git pull!
The correct way to force Git to forget about a file is documented by GitHub here.
I recommend reading the documentation, but basically:
git fetch --all
git filter-branch --force --index-filter 'git rm --cached --ignore-unmatch full/path/to/file' --prune-empty --tag-name-filter cat -- --all
git push origin --force --all
git push origin --force --tags
git for-each-ref --format='delete %(refname)' refs/original | git update-ref --stdin
git reflog expire --expire=now --all
git gc --prune=now
Just replace full/path/to/file with the full path of the file. Make sure you've added the file to your .gitignore file.
You'll also need to (temporarily) allow non-fast-forward pushes to your repository, since you're changing your Git history.
Move or copy the file to a safe location, so you don't lose it. Then 'git rm' the file and commit.
The file will still show up if you revert to one of those earlier commits, or another branch where it has not been removed. However, in all future commits, you will not see the file again. If the file is in the Git ignore, then you can move it back into the folder, and Git won't see it.
The answer from Matt Frear was the most effective IMHO. The following is just a PowerShell script for those on Windows to only remove files from their Git repository that matches their exclusion list.
# Get files matching exclusionsfrom .gitignore
# Excluding comments and empty lines
$ignoreFiles = gc .gitignore | ?{$_ -notmatch "#"} | ?{$_ -match "\S"} | % {
$ignore = "*" + $_ + "*"
(gci -r -i $ignore).FullName
}
$ignoreFiles = $ignoreFiles| ?{$_ -match "\S"}
# Remove each of these file from Git
$ignoreFiles | % { git rm $_}
git add .
The accepted answer does not "make Git "forget" about a file..." (historically). It only makes Git ignore the file in the present/future.
This method makes Git completely forget ignored files (past/present/future), but it does not delete anything from the working directory (even when re-pulled from remote).
This method requires usage of file /.git/info/exclude (preferred) or a pre-existing .gitignore in all the commits that have files to be ignored/forgotten. 1
All methods of enforcing Git ignore behavior after-the-fact effectively rewrite history and thus have significant ramifications for any public/shared/collaborative repositories that might be pulled after this process. 2
General advice: start with a clean repository - everything committed, nothing pending in working directory or index, and make a backup!
Also, the comments/revision history of this answer (and revision history of this question) may be useful/enlightening.
#Commit up-to-date .gitignore (if not already existing)
#This command must be run on each branch
git add .gitignore
git commit -m "Create .gitignore"
#Apply standard Git ignore behavior only to the current index, not the working directory (--cached)
#If this command returns nothing, ensure /.git/info/exclude AND/OR .gitignore exist
#This command must be run on each branch
git ls-files -z --ignored --exclude-standard | xargs -0 git rm --cached
#Commit to prevent working directory data loss!
#This commit will be automatically deleted by the --prune-empty flag in the following command
#This command must be run on each branch
git commit -m "ignored index"
#Apply standard git ignore behavior RETROACTIVELY to all commits from all branches (--all)
#This step WILL delete ignored files from working directory UNLESS they have been dereferenced from the index by the commit above
#This step will also delete any "empty" commits. If deliberate "empty" commits should be kept, remove --prune-empty and instead run git reset HEAD^ immediately after this command
git filter-branch --tree-filter 'git ls-files -z --ignored --exclude-standard | xargs -0 git rm -f --ignore-unmatch' --prune-empty --tag-name-filter cat -- --all
#List all still-existing files that are now ignored properly
#If this command returns nothing, it's time to restore from backup and start over
#This command must be run on each branch
git ls-files --other --ignored --exclude-standard
Finally, follow the rest of this GitHub guide (starting at step 6) which includes important warnings/information about the commands below.
git push origin --force --all
git push origin --force --tags
git for-each-ref --format="delete %(refname)" refs/original | git update-ref --stdin
git reflog expire --expire=now --all
git gc --prune=now
Other developers that pull from the now-modified remote repository should make a backup and then:
#fetch modified remote
git fetch --all
#"Pull" changes WITHOUT deleting newly-ignored files from working directory
#This will overwrite local tracked files with remote - ensure any local modifications are backed-up/stashed
git reset FETCH_HEAD
Footnotes
1 Because /.git/info/exclude can be applied to all historical commits using the instructions above, perhaps details about getting a .gitignore file into the historical commit(s) that need it is beyond the scope of this answer. I wanted a proper .gitignore file to be in the root commit, as if it was the first thing I did. Others may not care since /.git/info/exclude can accomplish the same thing regardless where the .gitignore file exists in the commit history, and clearly rewriting history is a very touchy subject, even when aware of the ramifications.
FWIW, potential methods may include git rebase or a git filter-branch that copies an external .gitignore into each commit, like the answers to this question.
2 Enforcing Git ignore behavior after-the-fact by committing the results of a stand-alone git rm --cached command may result in newly-ignored file deletion in future pulls from the force-pushed remote. The --prune-empty flag in the following git filter-branch command avoids this problem by automatically removing the previous "delete all ignored files" index-only commit. Rewriting Git history also changes commit hashes, which will wreak havoc on future pulls from public/shared/collaborative repositories. Please understand the ramifications fully before doing this to such a repository. This GitHub guide specifies the following:
Tell your collaborators to rebase, not merge, any branches they created off of your old (tainted) repository history. One merge commit could reintroduce some or all of the tainted history that you just went to the trouble of purging.
Alternative solutions that do not affect the remote repository are git update-index --assume-unchanged </path/file> or git update-index --skip-worktree <file>, examples of which can be found here.
In my case I needed to put ".envrc" in the .gitignore file.
And then I used:
git update-index --skip-worktree .envrc
git rm --cached .envrc
And the file was removed.
Then I committed again, telling that the file was removed.
But when I used the command git log -p, the content of the file (which was secret credentials of the Amazon S3) was showing the content which was removed and I don't want to show this content ever on the history of the Git repository.
Then I used this command:
git filter-branch --index-filter 'git rm --cached --ignore-unmatch .envrc' HEAD
And I don't see the content again.
I liked JonBrave's answer, but I have messy enough working directories that commit -a scares me a bit, so here's what I've done:
git config --global alias.exclude-ignored '!git ls-files -z --ignored --exclude-standard | xargs -0 git rm -r --cached && git ls-files -z --ignored --exclude-standard | xargs -0 git stage && git stage .gitignore && git commit -m "new gitignore and remove ignored files from index"'
Breaking it down:
git ls-files -z --ignored --exclude-standard | xargs -0 git rm -r --cached
git ls-files -z --ignored --exclude-standard | xargs -0 git stage
git stage .gitignore
git commit -m "new gitignore and remove ignored files from index"
remove ignored files from the index
stage .gitignore and the files you just removed
commit
The BFG is specifically designed for removing unwanted data like big files or passwords from Git repositories, so it has a simple flag that will remove any large historical (not-in-your-current-commit) files: '--strip-blobs-bigger-than'
java -jar bfg.jar --strip-blobs-bigger-than 100M
If you'd like to specify files by name, you can do that too:
java -jar bfg.jar --delete-files *.mp4
The BFG is 10-1000x faster than git filter-branch and is generally much easier to use - check the full usage instructions and examples for more details.
Source: Reduce repository size
If you don't want to use the CLI and are working on Windows, a very simple solution is to use TortoiseGit. It has the "Delete (keep local)" Action in the menu which works fine.
This is no longer an issue in the latest Git (v2.17.1 at the time of writing).
The .gitignore file finally ignores tracked-but-deleted files. You can test this for yourself by running the following script. The final git status statement should report "nothing to commit".
# Create an empty repository
mkdir gitignore-test
cd gitignore-test
git init
# Create a file and commit it
echo "hello" > file
git add file
git commit -m initial
# Add the file to gitignore and commit
echo "file" > .gitignore
git add .gitignore
git commit -m gitignore
# Remove the file and commit
git rm file
git commit -m "removed file"
# Reintroduce the file and check status.
# .gitignore is now respected - status reports "nothing to commit".
echo "hello" > file
git status
This is how I solved my issue:
git filter-branch --tree-filter 'rm -rf path/to/your/file' HEAD
git push
In this, we are basically trying to rewrite the history of that particular file in previous commits also.
For more information, you can refer to the man page of filter-branch here.
Source: Removing sensitive data from a repository - using filter-branch
Source: Git: How to remove a big file wrongly committed
In case of already committed DS_Store:
find . -name .DS_Store -print0 | xargs -0 git rm --ignore-unmatch
Ignore them by:
echo ".DS_Store" >> ~/.gitignore_global
echo "._.DS_Store" >> ~/.gitignore_global
echo "**/.DS_Store" >> ~/.gitignore_global
echo "**/._.DS_Store" >> ~/.gitignore_global
git config --global core.excludesfile ~/.gitignore_global
Finally, make a commit!
Especially for the IDE-based files, I use this:
For instance, for the slnx.sqlite file, I just got rid off it completely like the following:
git rm {PATH_OF_THE_FILE}/slnx.sqlite -f
git commit -m "remove slnx.sqlite"
Just keep that in mind that some of those files store some local user settings and preferences for projects (like what files you had open). So every time you navigate or do some changes in your IDE, that file is changed and therefore it checks it out and show as uncommitted changes.
If anyone is having a hard time on Windows and you want to ignore the entire folder, go to the desired 'folder' on file explorer, right click and do 'Git Bash Here' (Git for Windows should have been installed).
Run this command:
git ls-files -z | xargs -0 git update-index --assume-unchanged
For me, the file was still available in the history and I first needed to squash the commits that added the removed files: https://gist.github.com/patik/b8a9dc5cd356f9f6f980
Combine the commits. The example below combines the last 3 commits
git reset --soft HEAD~3
git commit -m "New message for the combined commit"
Push the squashed commit
If the commits have been pushed to the remote:
git push origin +name-of-branch
In my case here, I had several .lock files in several directories that I needed to remove. I ran the following and it worked without having to go into each directory to remove them:
git rm -r --cached **/*.lock
Doing this went into each folder under the 'root' of where I was at and excluded all files that matched the pattern.

Git add -A usage

I am using Husky in my ReactJs project. The idea is when user will commit the changes there should be run some lint commands.For this i added in my package.json:
"lint": "next lint --fix",
"lint:fix": "lint && git add -A .",
Before committing the message i run lint:fix. Everything is working. Also i know that this command git add -A . will add the changes if they will occur after lint command, so if the dev will commit => lint will fix the issues => and if there are some changes git automatically will add these changes to the commit without doing again git add . and git commit -m .... Question: Have this command git add -A . any disadvantages and is it ok to add there?
Have this command git add -A . any disadvantages
First git add . is enough (the -A is the default since Git 2.x)
Second, the main (in general) inconvenient is that it adds everything, even if you might have other unrelated modifications. It also adds new files.
In your case (used in a pre-commit hook), you have prepared your index (git add only the files you want to commit): the git add . might risk adding other files that you did not want initially to iclude in your next commit.
another question, is lint-staged (https://npmjs.com/package/lint-staged) the same as git add -u in my situation "lint:fix": "lint && git add -u"?
The README mentions:
From v10.0.0 onwards any new modifications to originally staged files will be automatically added to the commit.
If your task previously contained a git add step, please remove this.
The automatic behaviour ensures there are less race-conditions, since trying to run multiple git operations at the same time usually results in an error.

Removing a file in Git repo but file doesn't exist

In committing and pushing to my repo, I get the following error:
The issue is that I've already manually deleted the video file. The video does not exist anywhere in my repo.
I also tried to
git rm src/assets/video/Greensleeves and it says fatal: pathspec src/assets/video/Greensleeves did not match any files.
How can I get passed this so that I can commit/push?
Try and apply the new git filter-repo, which does replace the old git filter-branch or BFG.
It has many usage examples, including path-based filtering, in order for you to remote the src/assets/video/Greensleeves file in past commits:
To keep all files except these paths, just add --invert-paths:
git filter-repo --path src/assets/video/Greensleeves --invert-paths
Then git push --force (that does rewrite the history of your repository, so make sure to notify any other collaborator)
Since it must be done on a fresh clone:
Don't touch anything to your current clone folder
Create a separate clone of the repository, where you do the filter repo
In that second clone, now cleaned (no more big file in its history), import your work from your first repo
That is, for point 3:
cd /path/to/second/clone
git --work-tree=/path/to/first/original/clone add .
git commit -m "Import work from first clone"
git push --force

How to auto run bash commands after each git rebase --continue?

I am trying to rebase a branch onto a drastically different one. It's a React project. If I merge two branches brutally, I cannot even compile the code. Therefore, I am trying to rebase interactively.
While doing that, I want to make sure that after each rebase step the code base can compile. What would be a way to automatically reinstall node_modules and rerun the project (say I use yarn start to run the project) after each git rebase --continue?
Or if I am not on an ideal route, what would be the right way to merge those two branches?
The way to do this is use -x/--exec to run a command between each step. For example, if I do:
git rebase HEAD~3 -i -x 'npm run ship'
Then I see the following rebase plan:
pick <hash> <message>
exec npm run ship
pick <hash> <message>
exec npm run ship
pick <hash> <message>
exec npm run ship
In this case npm run ship is the command that runs all of the linting, testing, etc. to check that each commit is still good.
Note that the command needs to succeed (i.e. exit 0) for the rebase to continue, so make sure that's true of whatever you plan to do to check each commit.

Push changes to bitbucket using atom

I am using the text editor Atom and it should be possible to upload directly to bitbucket from atom. I found a thread here on stackoverflow someone asked for this and someone recommended git-plus package. I did download this package but it tells me i need to edit user.email and user.name variable in gitconfig file. But it doesnt say anywhere where i can find this gitconfig file. I found a few config files but none of them have these variables. Is this gitconfig file in my .git folder in my project or is it somewhere in atom? I hope someone here can help me with this
Set up git in your shell to use bitbucket as the remote repo.
You will first need to sort that basic Git config thing about the emails:
$ git config --global --get user.name
Your Name Here
$ git config --global --get user.email
your_email#someplace.com
If you don't have these values already added, then simply add them. Put your current directory someplace under the root of your atom repository (or, if you want to use the --global parameters [recommended]), then anywhere will do, really so long as it's your login you're working with.)
$ git config [--global] user.name "Your Name"
$ git config [--global] user.email "your_email#somplace.com"
First set up your ssh key so you don't have to type your password on every command. Once that's done, then go to the Git repo you set up for your Atom project. Most likely that's in the top level of my project. Go there and...
$ git remote -v
$ git remote add origin git#bitbucket.org:youruid/yourrepo.git
Now try it from the shell to make sure all is working:
$ git push
It's very likely you'll get a message similar to:
fatal: The current branch master has no upstream branch.
To push the current branch and set the remote as upstream, use
git push --set-upstream origin master
Follow the advice given, then, if you're feeling particularly paranoid, make a change to any file in the repo -- using atom if you like, doesn't matter -- and try it all again:
$ git add -u
$ git commit [-v]
...
$ git push
This time, it should go off without a hitch.
Now back to atom...
If you've configured things there so that atom can access your Git repo locally, there should now be a Fetch widget in the lower right corner:
If you make a change now in atom, you'll see this change to Push... with the functionality to match.
The GitHub widget still doesn't do anything -- which is mildly annoying -- but I believe you might be able to find an atom package out there that does similar things.

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