pthread_join() causing seg fault - c

Question

So I've looked over about every issue i could fine both on stack and many other sources. While i was able to fix some issues and add some extra testing it still hasnt resolved my issue. The program is set up with mergesort.c, which calls the functions, mergesortTest.c, which tests my functions. The serial implementation works just fine. I got past the issue with my initial creates. However, now that im trying to join them I'm getting a seg fault. Ive used both valgrind and gdb to test it and its on my join. Though i cant print out an error message since it causes a seg fault and shuts down my program. Ive made sure to try and allocate proper space. However ill post my code and the output of gdb in hopes someone can help me with this.
**mergesort.c**
#include <pthread.h>
#include <stdio.h>
#include <stdlib.h>
#include <limits.h>
#define TRUE 1
#define FALSE 0
#define MAX 100000000
#define MAX_CORE 4
// function prototypes
void serial_mergesort(int A[], int p, int r);
void merge(int A[], int p, int q, int r);
void insertion_sort(int A[], int p, int r);
void *pthread_mergesort(void *arg);
struct mergeS
{
int numElements;
int *A;
int level;
int Max_Level;
};
const int INSERTION_SORT_THRESHOLD = 100; //based on trial and error
/*
* insertion_sort(int A[], int p, int r):
*
* description: Sort the section of the array A[p..r].
*/
void insertion_sort(int A[], int p, int r)
{
int j;
for (j=p+1; j<=r; j++) {
int key = A[j];
int i = j-1;
while ((i > p-1) && (A[i] > key)) {
A[i+1] = A[i];
i--;
}
A[i+1] = key;
}
}
/*
* serial_mergesort(int A[], int p, int r):
*
* description: Sort the section of the array A[p..r].
*/
void serial_mergesort(int A[], int p, int r)
{
if (r-p+1 <= INSERTION_SORT_THRESHOLD) {
insertion_sort(A,p,r);
} else {
int q = (p+r)/2;
serial_mergesort(A, p, q);
serial_mergesort(A, q+1, r);
merge(A, p, q, r);
}
}
/*
* pthread_mergesort(void *arg)
*
* description:Sorts based off levels
*
*/
void *pthread_mergesort(void *arg)
{
struct mergeS *threader = (struct mergeS*) arg;
int i = 0;
int flag = 0;
int level = (threader)->level;
printf("level: %d\n",level);
int numElements = threader->numElements;
int Max_Level = threader->Max_Level;
int *A = threader->A;
if(Max_Level == 1)
{
serial_mergesort(A,1,numElements + 1);
return NULL;
}
int low = level * (numElements/Max_Level) + 1;
int high =((level + 1) * ((numElements/Max_Level)));
pthread_t *tids = (pthread_t*) malloc(sizeof(pthread_t) * 2);
struct mergeS *merger = (struct mergeS*) malloc(sizeof(struct mergeS) * 2);
int error = 0;
if(level < Max_Level - 1)
{
for(i = 0;i < 2; i ++)
{
printf("for loop\n");
merger[i].numElements = numElements/(i + 1);
merger[i].level = threader->level + 1;
merger[i].Max_Level = threader->Max_Level;
merger[i].A = threader->A;
if((error = pthread_create(&tids[i],NULL,pthread_mergesort,(void*)&merger[i])) == 0)
{
printf("thread failed\n");
flag = 1;
}
}
printf("error: %d\n",error);
}
serial_mergesort(A,low,high);
int j = 0;
if(flag == 0)
{
for(j = 0;j < 2; j++)
{
printf("for level: %d\n",threader->level);
printf("join = %d\n", j);
if((error = pthread_join(tids[j],NULL)) != 0)
{
printf("error: %d\n",error);
}
}
}
merge(A,low,(high/2) + 1,high);
free(merger);
free (tids);
return NULL;
}
/*
* merge(int A[], int p, int q, int r):
*
* description: Merge two sorted sequences A[p..q] and A[q+1..r]
* and place merged output back in array A. Uses extra
* space proportional to A[p..r].
*/
void merge(int A[], int p, int q, int r)
{
int *B = (int *) malloc(sizeof(int) * (r-p+1));
int i = p;
int j = q+1;
int k = 0;
int l;
// as long as both lists have unexamined elements
// this loop keeps executing.
while ((i <= q) && (j <= r)) {
if (A[i] < A[j]) {
B[k] = A[i];
i++;
} else {
B[k] = A[j];
j++;
}
k++;
}
// now only at most one list has unprocessed elements.
if (i <= q) {
// copy remaining elements from the first list
for (l=i; l<=q; l++) {
B[k] = A[l];
k++;
}
} else {
// copy remaining elements from the second list
for (l=j; l<=r; l++) {
B[k] = A[l];
k++;
}
}
// copy merged output from array B back to array A
k=0;
for (l=p; l<=r; l++) {
A[l] = B[k];
k++;
}
free(B);
}
end of file
**mergesortTest.c**
#include <pthread.h>
#include <stdio.h>
#include <stdlib.h>
#define MAX_THREAD 4
#define TRUE 1
#define FALSE 0
// function prototypes
int check_if_sorted(int A[], int n);
void generate_random_array(int A[], int n, int seed);
void serial_mergesort(int A[], int p, int r);
void *pthread_mergesort(void *arg);
void merge(int A[], int p, int q, int r);
void insertion_sort(int A[], int p, int r);
double getMilliSeconds();
// Struct
struct mergeS
{
int numElements;
int *A;
int level;
int Max_Level;
};
/*
* generate_random_array(int A[], int n, int seed):
*
* description: Generate random integers in the range [0,RANGE]
* and store in A[1..n]
*/
#define RANGE 1000000
void generate_random_array(int A[], int n, int seed)
{
int i;
srandom(seed);
for (i=1; i<=n; i++){
A[i] = random()%RANGE;
}
}
/*
* check_if_sorted(int A[], int n):
*
* description: returns TRUE if A[1..n] are sorted in nondecreasing order
* otherwise returns FALSE
*/
int check_if_sorted(int A[], int n)
{
int i=0;
for (i=1; i<n; i++) {
if (A[i] > A[i+1]) {
printf("%d > %d\n",A[i],A[i+1]);
printf("i: %d\n",i);
return FALSE;
}
}
return TRUE;
}
int main(int argc, char **argv) {
printf("argc = %d\n",argc);
int n;
int Max_Level = 4;
int flag = 1;
int seed;
if (argc == 1) { // there must be at least one command-line argument
printf("Default: Input Size = 100000000 levels: 4\n");
printf("Usage: executable input size number of levels\n");
n = 100000000;
seed = 4;
flag = 0;
}
if (argc == 2 && flag == 1) {
printf("Default: Threads: 4\n");
printf("Usage: executable input size number of levels\n");
n = atoi(argv[1]);
Max_Level = 4;
seed = 4;
}
if(argc == 3)
{
n = atoi(argv[1]);
Max_Level = atoi(argv[2]);
seed = Max_Level;
}
if(Max_Level > 15)
{
printf("To many levels. Setting to 4\n");
Max_Level = 4;
seed = Max_Level;
}
int *A = (int *) malloc(sizeof(int) * (n+1)); // n+1 since we are using A[1]..A[n]
// generate random input
generate_random_array(A,n,seed);
double start_time;
double sorting_time;
// sort the input (and time it)
start_time = getMilliSeconds();
serial_mergesort(A,1,n);
sorting_time = getMilliSeconds() - start_time;
////////////////////////////////////////////////////////////////////////////////////////////////////// Start of parallel //////////////////////////////////////////////////////////////////////////////////////////////////////
int *B = (int *) malloc(sizeof(int) * (n+1)); // n+1 since we are using A[1]..A[n]
//int i;
double p_start_time;
double p_sorting_time;
struct mergeS *threader = (struct mergeS*) malloc(sizeof(struct mergeS));
generate_random_array(B,n,seed);
// sort the input with threads (and time it)
p_start_time = getMilliSeconds();
threader[0].numElements = n;
threader[0].level = 0;
threader[0].Max_Level = Max_Level;
threader[0].A = B;
pthread_mergesort(threader);
printf("sorted\n");
/*for(i = 0;i < n + 1;i = i + 1)
{
printf("B[%d]: %d\n",i,B[i]);
}
printf("B:[%d] = %d\n",999,B[999]);
*/
p_sorting_time = getMilliSeconds() - p_start_time;
// print results if correctly sorted otherwise cry foul and exit
if (check_if_sorted(A,n)) {
printf("Serial: Sorting %d elements took %4.2lf seconds.\n", n, sorting_time/1000.0);
} else {
printf("%s: sorting failed!!!!\n", argv[0]);
exit(EXIT_FAILURE);
}
if (check_if_sorted(B,n)) {
printf("Threaded: Sorting %d elements took %4.2lf seconds.\n", n, p_sorting_time/1000.0);
} else {
printf("%s: parallel sorting failed!!!!\n", argv[0]);
exit(EXIT_FAILURE);
}
free(threader);
free(A);
free(B);
exit(EXIT_SUCCESS);
}
end of file
**GBD error report and code output**
[rutgerluther#onyxnode72 multi-threaded]$ valgrind --leak-check=yes ./mergesort 1000 2
==5636== Memcheck, a memory error detector
==5636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==5636== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info
==5636== Command: ./mergesort 1000 2
==5636==
argc = 3
level: 0
for loop
thread failed
for loop
thread failed
error: 0
sorted
Serial: Sorting 1000 elements took 0.00 seconds.
993090 > 163007
i: 500
./mergesort: parallel sorting failed!!!!
==5636==
==5636== HEAP SUMMARY:
==5636== in use at exit: 9,152 bytes in 5 blocks
==5636== total heap usage: 30 allocs, 25 frees, 33,216 bytes allocated
==5636==
==5636== 1,120 bytes in 2 blocks are possibly lost in loss record 2 of 4
==5636== at 0x4C2B9B5: calloc (vg_replace_malloc.c:711)
==5636== by 0x40128C4: _dl_allocate_tls (in /usr/lib64/ld-2.17.so)
==5636== by 0x4E3E7FB: pthread_create##GLIBC_2.2.5 (in /usr/lib64/libpthread-2.17.so)
==5636== by 0x400E88: pthread_mergesort (mergesort.c:114)
==5636== by 0x400B00: main (mergesortTest.c:145)
==5636==
==5636== LEAK SUMMARY:
==5636== definitely lost: 0 bytes in 0 blocks
==5636== indirectly lost: 0 bytes in 0 blocks
==5636== possibly lost: 1,120 bytes in 2 blocks
==5636== still reachable: 8,032 bytes in 3 blocks
==5636== suppressed: 0 bytes in 0 blocks
==5636== Reachable blocks (those to which a pointer was found) are not shown.
==5636== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==5636==
==5636== For counts of detected and suppressed errors, rerun with: -v
==5636== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 0 from 0)
[rutgerluther#onyxnode72 multi-threaded]$ gdb ./mergesort
GNU gdb (GDB) Red Hat Enterprise Linux 7.6.1-110.el7
Copyright (C) 2013 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-redhat-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>...
Reading symbols from /home/RutgerLuther/RutgerLuther#u.boisestate.edu/backpack/CS453-1-f18/p2/multi-threaded/mergesort...done.
(gdb) b 130
Breakpoint 1 at 0x400abd: file mergesortTest.c, line 130.
(gdb) r 1000 2
Starting program: /home/RutgerLuther/RutgerLuther#u.boisestate.edu/backpack/CS453-1-f18/p2/multi-threaded/./mergesort 1000 2
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib64/libthread_db.so.1".
argc = 3
Breakpoint 1, main (argc=<optimized out>, argv=0x7fffffffcf98) at mergesortTest.c:135
135 struct mergeS *threader = (struct mergeS*) malloc(sizeof(struct mergeS));
Missing separate debuginfos, use: debuginfo-install glibc-2.17-222.el7.x86_64
(gdb) n
137 generate_random_array(B,n,seed);
(gdb)
140 p_start_time = getMilliSeconds();
(gdb)
141 threader[0].numElements = n;
(gdb)
142 threader[0].level = 0;
(gdb)
143 threader[0].Max_Level = Max_Level;
(gdb)
144 threader[0].A = B;
(gdb)
145 pthread_mergesort(threader);
(gdb)
level: 0
for loop
[New Thread 0x7ffff77f1700 (LWP 5892)]
thread failed
for loop
level: 1
for level: 1
join = 0
[New Thread 0x7ffff6ff0700 (LWP 5893)]
Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7ffff77f1700 (LWP 5892)]
0x00007ffff7bc7f01 in pthread_join () from /lib64/libpthread.so.0
(gdb)
end of file
**Valgrind report**
[rutgerluther#onyxnode72 multi-threaded]$ valgrind --leak-check=yes ./mergesort 1000 2
==5636== Memcheck, a memory error detector
==5636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==5636== Using Valgrind-3.13.0 and LibVEX; rerun with -h for copyright info
==5636== Command: ./mergesort 1000 2
==5636==
argc = 3
level: 0
for loop
thread failed
for loop
thread failed
error: 0
sorted
Serial: Sorting 1000 elements took 0.00 seconds.
993090 > 163007
i: 500
./mergesort: parallel sorting failed!!!!
==5636==
==5636== HEAP SUMMARY:
==5636== in use at exit: 9,152 bytes in 5 blocks
==5636== total heap usage: 30 allocs, 25 frees, 33,216 bytes allocated
==5636==
==5636== 1,120 bytes in 2 blocks are possibly lost in loss record 2 of 4
==5636== at 0x4C2B9B5: calloc (vg_replace_malloc.c:711)
==5636== by 0x40128C4: _dl_allocate_tls (in /usr/lib64/ld-2.17.so)
==5636== by 0x4E3E7FB: pthread_create##GLIBC_2.2.5 (in /usr/lib64/libpthread-2.17.so)
==5636== by 0x400E88: pthread_mergesort (mergesort.c:114)
==5636== by 0x400B00: main (mergesortTest.c:145)
==5636==
==5636== LEAK SUMMARY:
==5636== definitely lost: 0 bytes in 0 blocks
==5636== indirectly lost: 0 bytes in 0 blocks
==5636== possibly lost: 1,120 bytes in 2 blocks
==5636== still reachable: 8,032 bytes in 3 blocks
==5636== suppressed: 0 bytes in 0 blocks
==5636== Reachable blocks (those to which a pointer was found) are not shown.
==5636== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==5636==
==5636== For counts of detected and suppressed errors, rerun with: -v
==5636== ERROR SUMMARY: 1 errors from 1 contexts (suppressed: 0 from 0)
[rutgerluther#onyxnode72 multi-threaded]$
end of file
Im running this giving it only a 1000 elements and only using 2 threads. Though the issue still happens with any threads more than 1.
Ive read the man pages and looked at other exmaples and previous cases where i used this and class mates did. But i still cant figure it out.
Any help is appreciated.
If changed some things and pthread is creating correctly. This is stepping into the function. I dont know what the value of tids[0] should be. But the elements in the array are random numbers.
**mergesort.c function call on tids**
level: 1
116 if((error = pthread_create(&tids[i],NULL,pthread_mergesort,(void*)&merger[i])) != 0)
(gdb) info tids
Undefined info command: "tids". Try "help info".
(gdb) print tids[0]
$2 = 140737345689344
(gdb) print &tids
Address requested for identifier "tids" which is in register $r14
(gdb) print *tids
$3 = 140737345689344
(gdb) n
thread failed
for level: 1
join = 0
117 {
(gdb) print tids
$4 = (pthread_t *) 0x604f90
(gdb) print tids[0]
$5 = 140737345689344
(gdb)

Answer 1

The tids array contains uninitialized data if the branch if(level < Max_Level - 1) is not taken. You need to call pthread_join only if you called pthread_create successfully.