Imagine I have the following structure represented in an array:
The blue cells represent "boundaries" and the red cell represents the structures origin. I have a function that calculates the distances of each interior cell (cells which aren't boundaries) to its closest boundary and to the origin.
Currently I do this with a nested for loop which essentially tests all cell positions to my current position and selects the cell with the smallest distance which is also marked a boundary cell.
For small data-sets this is okay, but when you have a large array of possible points to iterate through this comes painfully slow.
I am looking for a solution which would be faster but trade accuracy. Currently I am able to return the exact closest boundary cell to any given interior cell but I only really need a close approximation of which cell is closest.
Each cell in the array already has the following information:
Arbitrary position (used for distance calculation)
Is a Boundary Cell
A list of neighbours (any cells which share an edge)
Things to note:
The structure does not necessarily conform to any type of specific polygon shape
The array isn't necessarily ordered in any logical way
The array is flat (i.e 1D)
Possible solutions I have thought of (but have otherwise untested):
An A* approach (as each cell knows its neighbour I could do something like this but I think it would be worse for performance than my current brute force method
A priority queue which sorts from smallest to largest distance from origin (but unsure of how to achieve approximate closest border)
I am assuming that the cells are irrelevant. Everything just depends on the distinguished points in the cells. Finding the distance to the origin is one calculation and cannot be improved. So your problem reduces to: You have red points and white points (to stick to your color scheme), and you want to find the closest blue point to each white point.
This is a version of nearest-neighbor search. There is extensive
literature on this problem, as well as variants such as approximate nearest-neighbor search. Here is one paper that could lead you to others:
Connor, Michael, and Piyush Kumar. "Practical Nearest Neighbor Search in the Plane." SEA. 2010. (Springer link.)
The bottom line is that with appropriate data structures, you can achieve
O(log n) query time per white point, which is much faster than the naive linear search.
Related
I have multiple faces in 3D space creating cells. All these faces lie within a predefined cube (e.g. of size 100x100x100).
Every face is convex and defined by a set of corner points and a normal vector. Every cell is convex. The cells are result of 3d voronoi tessellation, and I know the initial seed points of the cells.
Now for every integer coordinate I want the smallest distance to any face.
My current solution uses this answer https://math.stackexchange.com/questions/544946/determine-if-projection-of-3d-point-onto-plane-is-within-a-triangle/544947 and calculates for every point for every face for every possible triple of this faces points the projection of the point to the triangle created by the triple, checks if the projection is inside the triangle. If this is the case I return the distance between projection and original point. If not I calculate the distance from the point to every possible line segment defined by two points of a face. Then I choose the smallest distance. I repeat this for every point.
This is quite slow and clumsy. I would much rather calculate all points that lie on (or almost lie on) a face and then with these calculate the smallest distance to all neighbour points and repeat this.
I have found this Get all points within a Triangle but am not sure how to apply it to 3D space.
Are there any techniques or algorithms to do this efficiently?
Since we're working with a Voronoi tessellation, we can simplify the current algorithm. Given a grid point p, it belongs to the cell of some site q. Take the minimum over each neighboring site r of the distance from p to the plane that is the perpendicular bisector of qr. We don't need to worry whether the closest point s on the plane belongs to the face between q and r; if not, the segment ps intersects some other face of the cell, which is necessarily closer.
Actually it doesn't even matter if we loop r over some sites that are not neighbors. So if you don't have access to a point location subroutine, or it's slow, we can use a fast nearest neighbors algorithm. Given the grid point p, we know that q is the closest site. Find the second closest site r and compute the distance d(p, bisector(qr)) as above. Now we can prune the sites that are too far away from q (for every other site s, we have d(p, bisector(qs)) ≥ d(q, s)/2 − d(p, q), so we can prune s unless d(q, s) ≤ 2 (d(p, bisector(qr)) + d(p, q))) and keep going until we have either considered or pruned every other site. To do pruning in the best possible way requires access to the guts of the nearest neighbor algorithm; I know that it slots right into the best-first depth-first search of a kd-tree or a cover tree.
I have a problem where a maze is given and every cell has a number. At any cell, you can jump up/down/left/right as many cells as specified in the current cell. What could be a good admissible heuristic to reach the goal using A*?
I have tried Manhattan/Euclidean distance, but I believe they overestimate the cost.
A simple lower-bound would be the Manhatten distance divided by the size of the largest jump on the map (rounded down). This should also be a consistent heuristic.
The following problem is an exam exercise I found from an Artificial Intelligence course.
"Suggest a heuristic mechanism that allows this problem to be solved, using the Hill-Climbing algorithm. (S=Start point, F=Final point/goal). No diagonal movement is allowed."
Since it's obvious that Manhattan Distance or Euclidean Distance will send the robot at (3,4) and no backtracking is allowed, what is a possible solution (heuristic mechanism) to this problem?
EDIT: To make the problem clearer, I've marked some of the Manhattan distances on the board:
It would be obvious that, using Manhattan distance, the robot's next move would be at (3,4) since it has a heuristic value of 2 - HC will choose that and get stuck forever. The aim is try and never go that path by finding the proper heuristic algorithm.
I thought of the obstructions as being hot, and that heat rises. I make the net cost of a cell the sum of the Manhattan metric distance to F plus a heat-penalty. Thus there is an attractive force drawing the robot towards F as well as a repelling force which forces it away from the obstructions.
There are two types of heat penalties:
1) It is very bad to touch an obstruction. Look at the 2 or 3 cells neighboring cells in the row immediately below a given cell. Add 15 for every obstruction cell which is directly below the given cell and 10 for every diagonal neighbor which is directly below
2) For cells not in direct contact with the instructions -- the heat is more diffuse. I calculate it as 6 times the average number of obstruction blocks below the cell both in its column and in its neighboring columns.
The following shows the result of combining this all, as well as the path taken from S to F:
A crucial point it the way that the averaging causes the robot to turn left rather than right when it hits the top row. The unheated columns towards the left make that the cooler direction. It is interesting to note how all cells (with the possible exception of the two at the upper-right corner) are drawn to F by this heuristic.
I'm looking for a fast solution for the following problem:
I have a fixed point (let's say the upper right on the white measurement line) and need to find the closest point on a curve made of equally spaced points (the lower curve). Additionally, I do this for every point on the upper curve to draw the distances between the curves with different colours (three levels: below minimum [red], between minimum and maximum [orange] and above maximum [green]).
My current solution is a tradeoff: I take the fixed point, iterate through an arbitrary interval (e. g. 50 units to the left and right of the fixed point) and calculate the distance of each pair. This saves some CPU power, but it is neither elegant nor accurate, since I could miss a minimum distance outside my chosen interval.
Any proposals for a faster algorithm?
Edit: Equally spaced means all points have the same distance on the x-axis, this is true for both curves. Also I do not need to interpolate between the points, this would be too time consuming.
Rather than an arbitrary distance, you could perhaps iterate until "out of range".
In your example, suppose you start with the point on the upper curve at the top-right of your line. Then drop vertically downwards, you get a distance of (by my eye) about 200um.
Now you can move right from here testing points until the horizontal distance is 200um. Beyond that, it's impossible to get a distance less than 200um.
Moving left, the distance goes down until you find the 150um minimum, then starts rising again. Once you're 150um to the left of your upper point, again, it's impossible to beat the minimum you've found.
If you'd gone left first, you wouldn't have had to go so far right, so as an optimization either follow the direction in which the distance falls, or else work out from the middle in both directions at once.
I don't know how many um 50 units is, so this might be slower or faster than what you have. It does avoid the risk of missing a lower value, though.
Since you're doing lots of tests against the same set of points on the lower curve, you can proably improve on this by ignoring the fact that the points form a curve at all. Stick them all in a k-d tree or similar, and search that repeatedly. It's called a Nearest neighbor search.
It may help to identify this problem as a nearest neighbour search problem. That link includes a good discussion about the various algorithms that are used for this. If you are OK with using C++ rather than straight C, ANN looks like a good library for this.
It also looks as though this question has been asked before.
We can label the top curve y=t(x) and the bottom curve y=b(x). Label the closest-function x_b=c(x_t). We know that the closest-function is weakly monotone non-decreasing as two shortest paths never cross each other.
If you know that the distance function d(x_t,x_b) has only one local minimum for every fixed x_t (this happens if the curve is "smooth enough"), then you can save time by "walking" the curve:
- start with x_t=0, x_b=0
- while x_t <= x_max
-- find the closest x_b by local search
(increment x_b while the distance is decreasing)
-- add {x_t, x_b} to the result set
-- increment x_t
If you expect x_b to be smooth enough, but you cannot assume that and you want an exact result,
Walk the curve in both directions. Where the results agree, they are correct. Where they disagree, run a complete search betwen the two results (the leftmost and the rightmost local maxima). Sample the "ambiguous block" in such an order (binary division) to allow the most pruning due to the monotonicity.
As a middle ground:
Walk the curve in both directions. If the results disagree, choose among the two. If you can guarantee at most two local maxima for each fixed x_t, this produces the optimal solution. There are still some pathological cases where the optimal solution is not found, and contain a local minimum that is flanked by two other local minima that are both worse than this one. I dare say it is uncommon to find a case where the solution is far from optimal (assuming smooth y=b(x)).
I do work in theoretical chemistry on a high performance cluster, often involving molecular dynamics simulations. One of the problems my work addresses involves a static field of N-dimensional (typically N = 2-5) hyper-spheres, that a test particle may collide with. I'm looking to optimize (read: overhaul) the the data structure I use for representing the field of spheres so I can do rapid collision detection. Currently I use a dead simple array of pointers to an N-membered struct (doubles for each coordinate of the center) and a nearest-neighbor list. I've heard of oct- and quad- trees but haven't found a clear explanation of how they work, how to efficiently implement one, or how to then do fast collision detection with one. Given the size of my simulations, memory is (almost) no object, but cycles are.
How best to approach this for your problem depends on several factors that you have not described:
- Will the same hypersphere arrangement be used for many particle collision calculations?
- Are the hyperspheres uniform size?
- What is the movement of the particle (e.g. straight line/curve) and is that movement affected by the spheres?
- Do you consider the particle to have zero volume?
I assume that the particle does not have simple straight line movement as that would be the relatively fast calculation of finding the closest point between a line and a point, which is likely going to be about the same speed as finding which of the boxes the line intersects with (to determine where in the n-tree to examine).
If your hypersphere positions are fixed for a lot of particle collisions then computing a voronoi decomposition/Dirichlet tessellation would give you a fast way of later finding exactly which sphere is closest to your particle for any given point in the space.
However to answer your original question about octrees/quadtrees/2^n-trees, in n dimensions you start with a (hyper)-cube that contains the area of space that you are interested in. This will be subdivided into 2^n hypercubes if you deem the contents to be too complicated. This continues recursively until you have only simple elements (e.g. one hypersphere centroid) in the leaf nodes.
Now that the n-tree is built you use it for collision detection by taking the path of your particle and intersecting it with the outer hypercube. The intersection position will tell you which hypercube in the next level down of the tree to visit next, and you determine the position of intersection with all 2^n hypercubes at that level, following downwards until you reach a leaf node. Once you reach the leaf you can examine interactions between your particle path and the hypersphere stored at that leaf. If you have collision you have finished, otherwise you have to find the exit point of the particle path from the current hypercube leaf and determine which hypercube it moves to next. Continue until you find a collision or entirely leave the overall bounding hypercube.
Efficiently finding the neighbouring hypercube when exiting a hypercube is one of the most challenging parts of this approach. For 2^n trees Samet's approaches {1, 2} can be adapted. For kd-trees (binary trees) an approach is suggested in {3} section 4.3.3.
Efficient implementation can be as simple as storing a list of 8 pointers from each hypercube to its children hypercubes, and marking the hypercube in a special way if it is a leaf (e.g. make all pointers NULL).
A description of dividing space to create a quadtree (which you can generalise to n-tree) can be found in Klinger & Dyer {4}
As others have mentioned kd-trees may be more suited than 2^n-trees as extension to an arbitrary number of dimensions is more straightforward, however they will result in a deeper tree. It is also easier to adapt the split positions to match the geometry of your
hyperspheres with a kd-tree. The description above of collision detection in a 2^n tree is equally applicable to a kd-tree.
{1} Connected Component Labeling, Hanan Samet, Using Quadtrees Journal of the ACM Volume 28 , Issue 3 (July 1981)
{2} Neighbor finding in images represented by octrees, Hanan Samet, Computer Vision, Graphics, and Image Processing Volume 46 , Issue 3 (June 1989)
{3} Convex hull generation, connected component labelling, and minimum distance
calculation for set-theoretically defined models, Dan Pidcock, 2000
{4} Experiments in picture representation using regular decomposition, Klinger, A., and Dyer, C.R. E, Comptr. Graphics and Image Processing 5 (1976), 68-105.
It sounds like you'd want to implement a kd-tree, which would allow you to more quickly search the N-dimensional space. There's some more information and links to implementations at the Stony Brook Algorithm Repository.
Since your field is static (by which I'm assuming you mean that the hyper spheres don't move), then the fastest solution I know of is a Kdtree.
You can either make your own, or use someone else's, like this one:
http://libkdtree.alioth.debian.org/
A Quad tree is a 2 dimensional tree, in which at each level a node has 4 children, each of which covers 1/4 of the area of the parent node.
An Oct tree is a 3 dimensional tree, in which at each level a node has 8 children, each of which contains 1/8th of the volume of the parent node. Here is picture to help you visualize it: http://en.wikipedia.org/wiki/Octree
If you're doing N dimensional intersection tests, you could generalize this to an N tree.
Intersection algorithms work by starting at the top of the tree and recursively traversing into any child nodes that intersect the object being tested, at some point you get to leaf nodes, which contain the actual objects.
An octree will work as long as you can specify the spheres by their centres - it hierarchically bins points into cubic regions with eight children. Working out neighbours in an octree data structure will require you to do sphere-intersecting-cube calculations (to some extent easier than they look) to work out which cubic regions in an octree are within the sphere.
Finding the nearest neighbours means walking back up the tree until you get a node with more than one populated child and all surrounding nodes included (this ensures the query gets all sides).
From memory, this is the (somewhat naive) basic algorithm for sphere-cube intersection:
i. Is the centre within the cube (this gets the eponymous situation)
ii. Are any of the corners of the cube within radius r of the centre (corners within the sphere)
iii. For each surface of the cube (you can eliminate some of the surfaces by working out which side of the surface the centre lies on) work out (this is all first-year vector arithmetic):
a. A normal of the surface that goes to the centre of the sphere
b. The distance from the centre of the sphere to the intersection of the normal with the plane of the surface (chord intersets plane the surface of the cube)
c. Intersection of the plane lies within the side of the cube (one condition of chord intersection to the cube)
iv. Calculate the size of the chord (Sin of Cos^-1 of ratio of normal length to radius of sphere)
v. If the nearest point on the line is less than the distance of the chord and the point lies between the ends of the line the chord intersects one of the edges of the cube (chord intersects cube surface somewhere along one of the edges).
Slightly dimly remembered but this is something I did for a situation involving spherical regions using an octee data structure (many years ago). You may also wish to check out KD-trees as some of the other posters suggest but your initial question sounds very similar to what I did.