References:
id scheme
Format: id:<namespace>:<document-type>:<key/value-pairs>:<user-specified>
http://docs.vespa.ai/documentation/content/buckets.html
http://docs.vespa.ai/documentation/content/idealstate.html
its possible to structure data in user defined bucketing logic by using 32 LSB in document-id format (n / g selections).
however, the query logic isn't very clear on how to route queries to a specific bucket range based on a decision taken in advance.
e.g., it is possible to split data into a time range (start-time/end-time) if i can define n (a number) compressing the range. all documents tagged such will end up in same bucket (that will follow its course of split on number of documents / size as configured).
however, how do i write a search query on data indexed in such manner?
is it possible to indicate the processor to choose a specific bucket, or range of buckets (in case distribution algorithm might have moved buckets)?
You can choose one bucket in a query by specifying the streaming.groupname query property.
Either in the http request by adding
&streaming.groupname=[group]
or in a Searcher by
query.properties().set("streaming.groupname","[group]").
If you want multiple buckets, use the parameter streaming.selection instead, which accepts any document selection expression: http://docs.vespa.ai/documentation/reference/document-select-language.html
To specify e.g two buckets, use set streaming.selection (in the HTTP request or a Searcher) to
id.group=="[group1]" and id.group=="[group2]"
See http://docs.vespa.ai/documentation/streaming-search.html
Note that streaming search should only be used when each query only need to search one or a few buckets. It avoids building reverse indexes, which is cheaper in that special case (only).
The &streaming.* parameters is described here http://docs.vespa.ai/documentation/reference/search-api-reference.html#streaming.groupname
This only applies to document types which are configured with mode=streaming, for default mode which is index you cannot control the query routing http://docs.vespa.ai/documentation/reference/services-content.html#document
Related
I currently have a an application running in the Google App Engine Standard Environment, which, among other things, contains a large database of weather data and a frontend endpoint that generates graph of this data. The database lives in Google Cloud Datastore, and the Python Flask application accesses it via the NDB library.
My issue is as follows: when I try to generate graphs for WeatherData spanning more than about a week (the data is stored for every 5 minutes), my application exceeds GAE's soft private memory limit and crashes. However, stored in each of my WeatherData entities are the relevant fields that I want to graph, in addition to a very large json string containing forecast data that I do not need for this graphing application. So, the part of the WeatherData entities that is causing my application to exceed the soft private memory limit is not even needed in this application.
My question is thus as follows: is there any way to query only certain properties in the entity, such as can be done for specific columns in a SQL-style query? Again, I don't need the entire forecast json string for graphing, only a few other fields stored in the entity. The other approach I tried to run was to only fetch a couple of entities out at a time and split the query into multiple API calls, but it ended up taking so long that the page would time out and I couldn't get it to work properly.
Below is my code for how it is currently implemented and breaking. Any input is much appreciated:
wDataCsv = 'Time,' + ','.join(wData.keys())
qry = WeatherData.time_ordered_query(ndb.Key('Location', loc),start=start_date,end=end_date)
for acct in qry.fetch():
d = [acct.time.strftime(date_string)]
for attr in wData.keys():
d.append(str(acct.dict_access(attr)))
wData[attr].append([acct.time.strftime(date_string),acct.dict_access(attr)])
wDataCsv += '\\n' + ','.join(d)
# Children Entity - log of a weather at parent location
class WeatherData(ndb.Model):
# model for data to save
...
# Function for querying data below a given ancestor between two optional
# times
#classmethod
def time_ordered_query(cls, ancestor_key, start=None, end=None):
return cls.query(cls.time>=start, cls.time<=end,ancestor=ancestor_key).order(-cls.time)
EDIT: I tried the iterative page fetching strategy described in the link from the answer below. My code was updated to the following:
wDataCsv = 'Time,' + ','.join(wData.keys())
qry = WeatherData.time_ordered_query(ndb.Key('Location', loc),start=start_date,end=end_date)
cursor = None
while True:
gc.collect()
fetched, next_cursor, more = qry.fetch_page(FETCHNUM, start_cursor=cursor)
if fetched:
for acct in fetched:
d = [acct.time.strftime(date_string)]
for attr in wData.keys():
d.append(str(acct.dict_access(attr)))
wData[attr].append([acct.time.strftime(date_string),acct.dict_access(attr)])
wDataCsv += '\\n' + ','.join(d)
if more and next_cursor:
cursor = next_cursor
else:
break
where FETCHNUM=500. In this case, I am still exceeding the soft private memory limit for queries of the same length as before, and the query takes much, much longer to run. I suspect the problem may be with Python's garbage collector not deleting the already used information that is re-referenced, but even when I include gc.collect() I see no improvement there.
EDIT:
Following the advice below, I fixed the problem using Projection Queries. Rather than have a separate projection for each custom query, I simply ran the same projection each time: namely querying all properties of the entity excluding the JSON string. While this is not ideal as it still pulls gratuitous information from the database each time, generating individual queries of each specific query is not scalable due to the exponential growth of necessary indices. For this application, as each additional property is negligible additional memory (aside form that json string), it works!
You can use projection queries to fetch only the properties of interest from each entity. Watch out for the limitations, though. And this still can't scale indefinitely.
You can split your queries across multiple requests (more scalable), but use bigger chunks, not just a couple (you can fetch 500 at a time) and cursors. Check out examples in How to delete all the entries from google datastore?
You can bump your instance class to one with more memory (if not done already).
You can prepare intermediate results (also in the datastore) from the big entities ahead of time and use these intermediate pre-computed values in the final stage.
Finally you could try to create and store just portions of the graphs and just stitch them together in the end (only if it comes down to that, I'm not sure how exactly it would be done, I imagine it wouldn't be trivial).
After working with neo4j and now coming to the point of considering to make my own entity manager (object manager) to work with the fetched data in the application, i wonder about neo4j's output format.
When i run a query it's always returned as tabular data. Why is this??
Sure tables keep a big place in data and processing, but it seems so strange that a graph database can only output in this format.
Now when i want to create an object graph in my application i would have to hydrate all the objects and this is not really good for performance and doesn't leverage true graph performace.
Consider MATCH (A)-->(B) RETURN A, B when there is one A and three B's, it would return:
A B
1 1
1 2
1 3
That's the same A passed down 3 times over the database connection, while i only need it once and i know this before the data is fetched.
Something like this seems great http://nigelsmall.com/geoff
a load2neo is nice, a load-from-neo would also be nice! either in the geoff format or any other formats out there https://gephi.org/users/supported-graph-formats/
Each language could then implement it's own functions to create the objects directly.
To clarify:
Relations between nodes are lost in tabular data
Redundant (non-optimal) format for graphs
Edges (relations) and vertices (nodes) are usually not in the same table. (makes queries more complex?)
Another consideration (which might deserve it's own post), what's a good way to model relations in an object graph? As objects? or as data/method inside the node objects?
#Kikohs
Q: What do you mean by "Each language could then implement it's own functions to create the objects directly."?
A: With an (partial) graph provided by the database (as result of a query) a language as PHP could provide a factory method (in C preferably) to construct the object graph (this is usually an expensive operation). But only if the object graph is well defined in a standard format (because this function should be simple and universal).
Q: Do you want to export the full graph or just the result of a query?
A: The result of a query. However a query like MATCH (n) OPTIONAL MATCH (n)-[r]-() RETURN n, r should return the full graph.
Q: you want to dump to the disk the subgraph created from the result of a query ?
A: No, existing interfaces like REST are prefered to get the query result.
Q: do you want to create the subgraph which comes from a query in memory and then request it in another language ?
A: no i want the result of the query in another format then tabular (examples mentioned)
Q: You make a query which only returns the name of a node, in this case, would you like to get the full node associated or just the name ? Same for the edges.
A: Nodes don't have names. They have properties, labels and relations. I would like enough information to retrieve A) The node ID, it's labels, it's properties and B) the relation to other nodes which are in the same result.
Note that the first part of the question is not a concrete "how-to" question, rather "why is this not possible?" (or if it is, i like to be proven wrong on this one). The second is a real "how-to" question, namely "how to model relations". The two questions have in common that they both try to find the answer to "how to get graph data efficiently in PHP."
#Michael Hunger
You have a point when you say that not all result data can be expressed as an object graph. It reasonable to say that an alternative output format to a table would only be complementary to the table format and not replacing it.
I understand from your answer that the natural (rawish) output format from the database is the result format with duplicates in it ("streams the data out as it comes"). I that case i understand that it's now left to an alternative program (of the dev stack) to do the mapping. So my conclusion on neo4j implementing something like this:
Pro's - not having to do this in every implementation language (of the application)
Con's - 1) no application specific mapping is possible, 2) no performance gain if implementation language is fast
"Even if you use geoff, graphml or the gephi format you have to keep all the data in memory to deduplicate the results."
I don't understand this point entirely, are you saying that these formats are no able to hold deduplicated results (in certain cases)?? So infact that there is no possible textual format with which a graph can be described without duplication??
"There is also the questions on what you want to include in your output?"
I was under the assumption that the cypher language was powerful enough to specify this in the query. And so the output format would have whatever the database can provide as result.
"You could just return the paths that you get, which are unique paths through the graph in themselves".
Useful suggestion, i'll play around with this idea :)
"The dump command of the neo4j-shell uses the approach of pulling the cypher results into an in-memory structure, enriching it".
Does the enriching process fetch additional data from the database or is the data already contained in the initial result?
There is more to it.
First of all as you said tabular results from queries are really commonplace and needed to integrate with other systems and databases.
Secondly oftentimes you don't actually return raw graph data from your queries, but aggregated, projected, sliced, extracted information out of your graph. So the relationships to the original graph data are already lost in most of the results of queries I see being used.
The only time that people need / use the raw graph data is when to export subgraph-data from the database as a query result.
The problem of doing that as a de-duplicated graph is that the db has to fetch all the result data data in memory first to deduplicate, extract the needed relationships etc.
Normally it just streams the data out as it comes and uses little memory with that.
Even if you use geoff, graphml or the gephi format you have to keep all the data in memory to deduplicate the results (which are returned as paths with potential duplicate nodes and relationships).
There is also the questions on what you want to include in your output? Just the nodes and rels returned? Or additionally all the other rels between the nodes that you return? Or all the rels of the returned nodes (but then you also have to include the end-nodes of those relationships).
You could just return the paths that you get, which are unique paths through the graph in themselves:
MATCH p = (n)-[r]-(m)
WHERE ...
RETURN p
Another way to address this problem in Neo4j is to use sensible aggregations.
E.g. what you can do is to use collect to aggregate data per node (i.e. kind of subgraphs)
MATCH (n)-[r]-(m)
WHERE ...
RETURN n, collect([r,type(r),m])
or use the new literal map syntax (Neo4j 2.0)
MATCH (n)-[r]-(m)
WHERE ...
RETURN {node: n, neighbours: collect({ rel: r, type: type(r), node: m})}
The dump command of the neo4j-shell uses the approach of pulling the cypher results into an in-memory structure, enriching it and then outputting it as cypher create statement(s).
A similar approach can be used for other output formats too if you need it. But so far there hasn't been the need.
If you really need this functionality it makes sense to write a server-extension that uses cypher for query specification, but doesn't allow return statements. Instead you would always use RETURN *, aggregate the data into an in-memory structure (SubGraph in the org.neo4j.cypher packages). And then render it as a suitable format (e.g. JSON or one of those listed above).
These could be a starting points for that:
https://github.com/jexp/cypher-rs
https://github.com/jexp/cypher_websocket_endpoint
https://github.com/neo4j-contrib/rabbithole/blob/master/src/main/java/org/neo4j/community/console/SubGraph.java#L123
There are also other efforts, like GraphJSON from GraphAlchemist: https://github.com/GraphAlchemist/GraphJSON
And the d3 json format is also pretty useful. We use it in the neo4j console (console.neo4j.org) to return the graph visualization data that is then consumed by d3 directly.
I've been working with neo4j for a while now and I can tell you that if you are concerned about memory and performances you should drop cypher at all, and use indexes and the other graph-traversal methods instead (e.g. retrieve all the relationships of a certain type from or to a start node, and then iterate over the found nodes).
As the documentation says, Cypher is not intended for in-app usage, but more as a administration tool. Furthermore, in production-scale environments, it is VERY easy to crash the server by running the wrong query.
In second place, there is no mention in the docs of an API method to retrieve the output as a graph-like structure. You will have to process the output of the query and build it.
That said, in the example you give you say that there is only one A and that you know it before the data is fetched, so you don't need to do:
MATCH (A)-->(B) RETURN A, B
but just
MATCH (A)-->(B) RETURN B
(you don't need to receive A three times because you already know these are the nodes connected with A)
or better (if you need info about the relationships) something like
MATCH (A)-[r]->(B) RETURN r
Apparently the default query limit on the number of returned documents is currently 20. Changing it is possible by using QueryOptions.Builder.setLimit(). Java dev docs don't seem to indicate the allowed maximum.
I have thousands of records indexed in my application and searches might potentially return a large number of objects. Instead of hardcoding something like MAX_QUERY_RESULTS = 1000 in the app, is there a way to programmatically access this search quota?
The class com.google.appengine.api.search.checkers.SearchApiLimits has a long list of constants of this ilk, including SEARCH_MAXIMUM_LIMIT with the value 1000.
Simple one really. In SQL, if I want to search a text field for a couple of characters, I can do:
SELECT blah FROM blah WHERE blah LIKE '%text%'
The documentation for App Engine makes no mention of how to achieve this, but surely it's a common enough problem?
BigTable, which is the database back end for App Engine, will scale to millions of records. Due to this, App Engine will not allow you to do any query that will result in a table scan, as performance would be dreadful for a well populated table.
In other words, every query must use an index. This is why you can only do =, > and < queries. (In fact you can also do != but the API does this using a a combination of > and < queries.) This is also why the development environment monitors all the queries you do and automatically adds any missing indexes to your index.yaml file.
There is no way to index for a LIKE query so it's simply not available.
Have a watch of this Google IO session for a much better and more detailed explanation of this.
i'm facing the same problem, but i found something on google app engine pages:
Tip: Query filters do not have an explicit way to match just part of a string value, but you can fake a prefix match using inequality filters:
db.GqlQuery("SELECT * FROM MyModel WHERE prop >= :1 AND prop < :2",
"abc",
u"abc" + u"\ufffd")
This matches every MyModel entity with a string property prop that begins with the characters abc. The unicode string u"\ufffd" represents the largest possible Unicode character. When the property values are sorted in an index, the values that fall in this range are all of the values that begin with the given prefix.
http://code.google.com/appengine/docs/python/datastore/queriesandindexes.html
maybe this could do the trick ;)
Altough App Engine does not support LIKE queries, have a look at the properties ListProperty and StringListProperty. When an equality test is done on these properties, the test will actually be applied on all list members, e.g., list_property = value tests if the value appears anywhere in the list.
Sometimes this feature might be used as a workaround to the lack of LIKE queries. For instance, it makes it possible to do simple text search, as described on this post.
You need to use search service to perform full text search queries similar to SQL LIKE.
Gaelyk provides domain specific language to perform more user friendly search queries. For example following snippet will find first ten books sorted from the latest ones with title containing fern
and the genre exactly matching thriller:
def documents = search.search {
select all from books
sort desc by published, SearchApiLimits.MINIMUM_DATE_VALUE
where title =~ 'fern'
and genre = 'thriller'
limit 10
}
Like is written as Groovy's match operator =~.
It supports functions such as distance(geopoint(lat, lon), location) as well.
App engine launched a general-purpose full text search service in version 1.7.0 that supports the datastore.
Details in the announcement.
More information on how to use this: https://cloud.google.com/appengine/training/fts_intro/lesson2
Have a look at Objectify here , it is like a Datastore access API. There is a FAQ with this question specifically, here is the answer
How do I do a like query (LIKE "foo%")
You can do something like a startWith, or endWith if you reverse the order when stored and searched. You do a range query with the starting value you want, and a value just above the one you want.
String start = "foo";
... = ofy.query(MyEntity.class).filter("field >=", start).filter("field <", start + "\uFFFD");
Just follow here:
init.py#354">http://code.google.com/p/googleappengine/source/browse/trunk/python/google/appengine/ext/search/init.py#354
It works!
class Article(search.SearchableModel):
text = db.TextProperty()
...
article = Article(text=...)
article.save()
To search the full text index, use the SearchableModel.all() method to get an
instance of SearchableModel.Query, which subclasses db.Query. Use its search()
method to provide a search query, in addition to any other filters or sort
orders, e.g.:
query = article.all().search('a search query').filter(...).order(...)
I tested this with GAE Datastore low-level Java API. Me and works perfectly
Query q = new Query(Directorio.class.getSimpleName());
Filter filterNombreGreater = new FilterPredicate("nombre", FilterOperator.GREATER_THAN_OR_EQUAL, query);
Filter filterNombreLess = new FilterPredicate("nombre", FilterOperator.LESS_THAN, query+"\uFFFD");
Filter filterNombre = CompositeFilterOperator.and(filterNombreGreater, filterNombreLess);
q.setFilter(filter);
In general, even though this is an old post, a way to produce a 'LIKE' or 'ILIKE' is to gather all results from a '>=' query, then loop results in python (or Java) for elements containing what you're looking for.
Let's say you want to filter users given a q='luigi'
users = []
qry = self.user_model.query(ndb.OR(self.user_model.name >= q.lower(),self.user_model.email >= q.lower(),self.user_model.username >= q.lower()))
for _qry in qry:
if q.lower() in _qry.name.lower() or q.lower() in _qry.email.lower() or q.lower() in _qry.username.lower():
users.append(_qry)
It is not possible to do a LIKE search on datastore app engine, how ever creating an Arraylist would do the trick if you need to search a word in a string.
#Index
public ArrayList<String> searchName;
and then to search in the index using objectify.
List<Profiles> list1 = ofy().load().type(Profiles.class).filter("searchName =",search).list();
and this will give you a list with all the items that contain the world you did on the search
If the LIKE '%text%' always compares to a word or a few (think permutations) and your data changes slowly (slowly means that it's not prohibitively expensive - both price-wise and performance-wise - to create and updates indexes) then Relation Index Entity (RIE) may be the answer.
Yes, you will have to build additional datastore entity and populate it appropriately. Yes, there are some constraints that you will have to play around (one is 5000 limit on the length of list property in GAE datastore). But the resulting searches are lightning fast.
For details see my RIE with Java and Ojbectify and RIE with Python posts.
"Like" is often uses as a poor-man's substitute for text search. For text search, it is possible to use Whoosh-AppEngine.
I am trying to retrieve data about groups on LDAP. As I need to paginate results, I need to run range queries. My setup uses JNDI to connect to LDAP. I am trying to run this query
(&(objectclass=group)(range=1-500))
What am I doing wrong? I know there are range based queries for LDAP,how do I modify this query for get the same?
Well paging is one thing and range is another. You page the results that you get back from the LDAP server when there are more than 1000 entries (at least that's the default in Active Directory).
MSDN has an article on how to do paged searches in .NET; hopefully you can translate that to your environment.
Range is something different. You use range when you have a multi-value-attribute (commonly the member-attribute for a group) that has a large number of values. So you can't have range in the query. You need to specify the range when you access the multi-value-attribute (then instead of just specifying member in the code accessing the property value you specify member;range=1-500 to get the first 500 values from that multivalue attribute).
Instead of Simple Paging control you may consider using Virtual List View control if your AD is version 2003 or above. Virtual List View provided advanced result sorting options and gives you more power in controlling the subset of the search result set.
This is how you need to query to get results
int start = 0;
int step = 1500;
int finish = 1499;
boolean finished = false;
String range;
String returnedAtts[] = {"member;Range=" + range};
searchCtls.setReturningAttributes(returnedAtts);
NamingEnumeration answer = readableDirContext.search(searchDN, searchFilter, searchCtls);