"Array index is less than one" error at Winbugs - arrays

I am working on a multilevel differential item functioning model using WinBUGS package. I have successfully built simpler models, but I have also gotten the error "array index is less than one". I'd be very pleased if you could help.
# Model
Model
{
for (l in 1:50){
y[l] ~ dbern(p[l])
logit(p[l])<- u2[stu[l]] - beta[x[l]] + gamma[tea[l], x[l]]*grp[l] + alpha1[x[l]]*geo[l] +
alpha2[x[l]]*conf[l] + alpha3[x[l]]*ses[l]
}
for (t in 1:10){
for (i in 1:10){
gamma[t,i] ~ dnorm(gamma.hat[t,i], tau.gamma[i])
gamma.hat[t,i]<-pi1[i] + pi2[i]*inq[t]
}
}
# fixed effect prior
for (i in 1:10){
beta[i] ~ dnorm(0, .0001)
alpha1[i] ~ dnorm(0, .0001)
alpha2[i] ~ dnorm(0, .0001)
alpha3[i] ~ dnorm(0, .0001)
pi1[i] ~ dnorm(0, .0001)
pi2[i] ~ dnorm(0, .0001)
}
# Random effect prior
for (s in 1:5){
u2[s] ~ dnorm(0,tau.u2)
}
tau.u2 <- pow(sigma.u2, -2)
sigma.u2 ~ dunif (0, 100)
for (i in 1:10){
tau.gamma[i] <- pow(sigma.gamma[i],-2)
sigma.gamma[i] ~ dunif(0,100)
}
}
# Data
list(y=c(0, 1, 1, 0, 0, 1, 0, 0, 1, 1, 0, 0, 1, 1, 0, 1, 1, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 0, 0, 1, 1, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0), ses=c(0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 1, 0, 1, 0, 1), conf=c(1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 1, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 1, 1), geo=c(1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 1, 0, 0, 1, 0, 1, 0, 0, 1, 0, 1, 1, 1, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 0, 0, 1, 1, 1), grp=c(1, 0, 1, 0, 0, 0, 1, 1, 1, 0, 1, 0, 0, 1, 1, 1, 0, 0, 0, 1, 0, 1, 1, 1, 0, 1, 0, 0, 0, 0, 1, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 1), inq=c(1, 3, 2, 1, 3, 2, 3, 2, 3, 2), stu=c(1, 0, 1, 1, 1, 1, 1, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 0, 1, 0, 1, 1, 1, 1, 0, 0, 0, 1, 0, 1, 0, 1, 0, 1, 1, 0, 0, 1, 0, 1, 1, 0, 1, 0, 1, 0, 1, 0, 1, 0), tea=c( 0, 0, 0, 1, 1, 0, 0, 1, 1, 0, 1, 1, 0, 0, 0, 1, 1, 0, 0, 0, 1, 1, 1, 0, 1, 1, 0, 0, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 1, 0, 1, 0, 1, 0, 0, 1), x=c(3, 2, 2, 1, 3, 2, 3, 3, 2, 2, 2, 3, 2, 3, 1, 3, 2, 2, 3, 2, 2, 3, 3, 2, 3, 2, 1, 2, 2, 1, 2, 3, 3, 2, 2, 2, 2, 2, 3, 3, 2, 2, 2, 3, 2, 2, 3, 2, 3, 2))
#Initital values
list(beta=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), alpha1=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), alpha2=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), alpha3=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), sigma.gamma=(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), u2=c(0, 0, 0, 0, 0), pi0=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), pi1=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0), sigma.u2=1, gamma=structure(
.Data=c(0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0), .Dim=c(10, 10)))


Indexes start from 1, not 0, in BUGS. The variables stu and tea are used for indexing, but they take the values 0,1 - they should be 1,2 instead.


Something going on with x. It is one shorter in length than the other variables, perhaps you are missing an observation.

Related

Finding distance between every point in a matrix

def create_zero_matrix(n,m):
return [[0 for i in range(m)] for j in range(n)]
def m_tight_print(m):
for i in range(len(m)):
line = ''
for j in range(len(m[0])):
line += str(m[i][j])
print(line)
def pd_map(r,c,sites):
blank = create_zero_matrix(r,c)
for count, site in enumerate(sites):
blank[site[0]][site[1]] = count #locating the shops
Hello, how do I calculate the distance of every point in my matrix from a specific point such as [1,3] (point 0) or [4,7] (point 1) or [7,2] (point 2) and change that particular value such that it shows the point that is closest to that particular coordinate?
>>> pprint(pizzaMap)
[[0, 0, 0, 0, 0, 0, 0, 'X', 1, 1]
[0, 0, 0, 0, 0, 0, 0, 1, 1, 1]
[0, 0, 0, 0, 0, 0, 0, 1, 1, 1]
[0, 0, 0, 0, 0, 0, 'X', 1, 1, 1]
['X', 0, 0, 0, 0, 0, 1, 1, 1, 1]
[2, 2, 2, 2, 2, 'X', 1, 1, 1, 1]
[2, 2, 2, 2, 2, 2, 1, 1, 1, 1]
[2, 2, 2, 2, 2, 2, 2, 1, 1, 1]
[2, 2, 2, 2, 2, 2, 2, 1, 1, 1]
[2, 2, 2, 2, 2, 2, 2, 'X', 1, 1]]
This above is the test case but I can only get this from my code.
[[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 1]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 2, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]
```.
I tried to use numpy.argwhere() but in the end I could not do it. What code must I use such that I am able to get my test case?

Stack vertically 5 2D-arrays in diagonal to build a whole 2d-array

l have 5 adjacency matrices (nump arrays) : A, B, C, D, E. each of dimension [20,20].
Given A, B, C, D, E, l would like to build F which stacks the 5 adjacency matrices. Since we have 5 2D arrays of [20,20] then F is of dimension [20*5,20*5] as follow :
F=np.zeros((100,100))
F=[
[A,0,0,0,...,0],
[0,...,B,...,0],
[0,...,..,C,0],
[0,.........D,..,0],
[0,...........,E],
]
such that :
A is indexed at F[0][:20]
B is indexed at F[1][20:40]
C is indexed at F[2][40:60]
D is indexed at F[3][60:80]
E is indexed at F[4][80:100]
What is the efficient numpy way to do that for larage number of adjacency matrices ?. Let's, we have n adjacency matrices to stack in a diagonal of new 2D array of [n*20,n*20]

You could use scipy.sparse.block_diag:
>>> AtoE = np.add.outer(np.arange(5, 10), np.zeros((3, 3), int))
>>> scipy.sparse.block_diag(AtoE).A
array([[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9]], dtype=int64)
Sparse storage may be a good idea, anyway.
Alternatively, here is a more direct method in case you definitely want to use dense arrays:
>>> A = AtoE[0]
>>> N, N = A.shape
>>> k = len(AtoE)
>>> out = np.zeros((k, N, k, N), A.dtype)
>>> np.einsum('ijik->ijk', out)[...] = AtoE
>>> out.reshape(k*N, k*N)
array([[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[5, 5, 5, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 6, 6, 6, 0, 0, 0, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 7, 7, 7, 0, 0, 0, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 8, 8, 0, 0, 0],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9],
[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 9, 9, 9]])

How to find the number of elements of a two-dimensional array, read from a file?

I have a file. Inside the file I have stored a two-dimensional array, something like this:
[[0, 0, 1, 0, 1, 0, 1, 0, 1, 0], [0, 0, 0, 0, 0, 0, 1, 1, 0, 0], [0, 0, 0, 0, 1, 1, 1, 1, 0, 0], [0, 0, 0, 1, 0, 0, 1, 0, 0, 0], [0, 1, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 1, 1, 0], [0, 1, 1, 0, 1, 0, 1, 0, 1, 0], [0, 1, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 1, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]
Lengths of arrays can vary and they are not always 10 elements long.
I read the array from the file using this method:
map = IO.readlines("test.txt")
and when i print the result using:
map.each {|x| puts "#{x}"}
the output is what I expect it to be. But if I try to get the row length using:
puts map[0].length
I get 320 instead of 10 (which is what I expect).
Can someone explain me why am I getting 320 instead of 10 ?

Instead of IO#readlines you should use JSON#parse since it’s a valid json:
require 'json'
JSON.parse(File.read("test.txt"))
#⇒ [[0, 0, 1, 0, 1, 0, 1, 0, 1, 0],
# [0, 0, 0, 0, 0, 0, 1, 1, 0, 0],
# [0, 0, 0, 0, 1, 1, 1, 1, 0, 0],
# [0, 0, 0, 1, 0, 0, 1, 0, 0, 0],
# [0, 1, 1, 0, 0, 0, 0, 0, 0, 0],
# [0, 0, 0, 0, 0, 0, 1, 1, 1, 0],
# [0, 1, 1, 0, 1, 0, 1, 0, 1, 0],
# [0, 1, 0, 0, 0, 0, 0, 1, 0, 0],
# [0, 0, 0, 1, 0, 0, 0, 1, 0, 0],
# [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]]

Illegal instruction 4 when passing a dynamically allocated array into const

I'm making a 2d array in C dynamically, because I have to populate it with an input file. I populate it and have tested that the values in the array are properly allocated.
in = (double**) malloc(trainingSize*sizeof(double*));
for (int i=0; i<trainingSize; i++) {
in[i] = (double*) malloc(res*sizeof(double));
}
train = (double**) malloc(trainingSize*sizeof(double*));
for (int i=0; i<trainingSize; i++) {
train[i] = (double*) malloc(numOutputs*sizeof(double));
for (int j=0; j<numOutputs; j++) {
train[i][j] = 0.0;
}
}
The code above seems to be working fine and compiles well, and I was able to properly test that it was working and populated with the correct values. When I try to call this function on it, however, I get an "Illegal instruction: 4" at runtime.
genann_train(ann, in[j], train[j], 3);
The function definition is
void genann_train(genann const *ann, double const *inputs, double const *desired_outputs, double learning_rate);
When I test this on a statically allocated array, the program runs just fine.
double input[3][400] = {{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}};
double output[3][26] = {{1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},{0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},{0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}};
genann_train(ann, input[j], output[j], 3);
This is the only change in the code that I made that caused the program to crash.

Not meant as an answer, but to long to post it as comment:
I cannot reproduce your runtime error, and actually the way how you allocate your array and how you pass it to genann_train seems to be OK. Maybe you access it in the wrong way in gennan_train in that you exceed array bounds.
See the following (slightly modified) code that shows how allocating and using the arrays works with your way of calling the methods:
void genann_train(double const *inputs, double const *desired_outputs, double learning_rate) {
for (int i=0; i<10; i++) {
printf("%lf ", inputs[i]);
}
}
int main() {
int trainingSize = 10;
int res = 10, numOutputs = 10;
double **in = (double**) malloc(trainingSize*sizeof(double*));
for (int i=0; i<trainingSize; i++) {
in[i] = (double*) malloc(res*sizeof(double));
}
double **train = (double**) malloc(trainingSize*sizeof(double*));
for (int i=0; i<trainingSize; i++) {
train[i] = (double*) malloc(numOutputs*sizeof(double));
for (int j=0; j<numOutputs; j++) {
train[i][j] = i*j;
}
}
genann_train(train[1], train[1], 3);
double input[3][400] = {{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0},{0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0}};
double output[3][26] = {{1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},{0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},{0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0}};
genann_train(input[1], output[1], 3);
}

2 Dimensional Array printing messed up

I was making a program that will print out the periodic table with [ ] for an element, and [*] for the element you're searching for...
void printmap(int x, int y)
{
int a, b, table[9][18] = {
1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1,
1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0,
0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0
}; // 0 - Empty, 1 - [ ], 2 - [*]
table[x][y] = 2;
b = 0;
printf("\n*******************\n\n");
for( a = 1, printf(" \t"); a < 19; a++)
{
printf("%3d", (b + a));
}
printf("\n");
for(a = 0; a < 9; a++)
{
printf("\n%2d\t", a + 1);
for(b = 0; b < 18; b++)
{
switch(table[a][b])
{
case 0 :
printf(" ");
case 1 :
printf("[ ]");
break;
case 2 :
printf("[*]");
break;
default :
printf("");
}
}
}
}
For some reason, the output is messed up... ( If I pass the argument for helium, which should be 0 and 18 this is what I get : http://pastebin.com/YjhjzSi8
What am I doing wrong?
Thank you

That's not a 2D array, just because you make it LOOK like a 2D array, doesn't mean it is one.
This what you have
table[9][18] = {
1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1,
1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1,
...
0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0
};
You should add more brackets accordingly
table[9][18] = {
{1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1},
{1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1),
....
{0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0}};

Been a while since I used C++, but, this is not how you initialize a 2D array. In fact I'm surprised it even compiles. Correct way is something like:
table[0] = {1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1};
table[1] = {1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1};
table[2] = {1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1};
...
Another example: 2D array values C++

As the other respondents have said, you need to initialize your table array correctly.
Also, you have missed a "break" in your switch/case statemet, and you also missed printing a newline at the end of each row. I took the liberty of renaming your variables a,b to row,col and fixed your code, this should do what you want,
void printmap(int x, int y)
{
int row=0, col=0;
int was = table[x][y];
table[x][y] = 2;
col = 0;
printf("\n*******************\n\n");
printf(" \t");
row=0; //you were not initializing row
for( col = 0; col < 18; col++)
{
printf("%3d", (col+row+1));
}
printf("\n");
for(row = 0; row < 9; row++)
{
printf("\n%2d\t", row + 1);
char* rc = " ";
for(col = 0; col < 18; col++)
{
switch(table[row][col])
{
case 0 : rc=(" "); break; //was missing break
case 1 : rc=("[ ]"); break;
case 2 : rc=("[*]"); break;
default: rc=(" "); break; //was missing break
}
printf("%s",rc);
}
printf("\n"); //missing print newline
}
table[x][y] = was;
}
And here is the table, as others have suggested,
int table[9][18] = {
{ 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1 },
{ 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1 },
{ 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1 },
{ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 },
{ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 },
{ 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 },
{ 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 },
{ 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0 },
{ 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0 }
}; // 0=Empty, 1=[ ], 2=[*]

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