Reading a binary file with IDL - c

I have an IDL routine that reads a binary data file. However, on this occasion, i'm getting "READU: End of file encountered. Unit 2, File: data.dat".
Instead of destroying the binary file and re-creating it. Is this problem surmountable? What IDL code could I use to allow me to read the binary file? The binary file was created by a C function.
Thanks in advance.

Based on the question, I'm assuming the binary file has a defined structure. You can probably use fstat() and eof() to get around this. For example:
openr, lun, 'file.bin', /get_lun
fs = fstat(lun)
len = fs.size / n_bytes_in_data_structure
for i = 0L, len - 1 do begin
readu, lun, var
...
If you don't know the size of your data structures or if you want to check that there's a sufficient number of bytes before a read, you can use fs.cur_ptr (after a call to fstat(), of course) or eof(lun).

Related

What is the correct approach to write multiple small pieces to a temp file in c, in multithreads?

I am simulating multithreads file downloading. My strategy is in each thread would receive small file pieces( each file piece has piece_length and piece_size and start_writing_pos )
And then each thread writes to the same buffer. How do I realize it ? Do I have to worry about collisions ?
//=================== follow up ============//
so I write a small demo as follows:
#include <stdio.h>
int main(){
char* tempfilePath = "./testing";
FILE *fp;
fp = fopen(tempfilePath,"w+");//w+: for reading and writing
fseek( fp, 9, SEEK_SET);//starting in 10-th bytes
fwrite("----------",sizeof(char), 10, fp);
fclose(fp);
}
And before execution I let content in "./testing" to be "XXXXXXXXXXXXXXXXXXX", after I do the above I get "^#^#^#^#^#^#^#^#^#----------" I wonder where is the problem then ....
Do what most torrent clients do. Create a file with the final size having an extension .part. Then allocate non-overlapping parts of the file to each thread, who shall have their own file-descriptors. Thus collisions are avoided. Rename to final name when finished.
Unless you want to use a mutex, you can't use fwrite(). FILE *-based IO using fopen(), fwrite(), and all related functions simply isn't reentrant - the FILE uses a SINGLE buffer., a SINGLE offset, etc.
You can't even use open() and lseek()/write() - multiple threads will interfere with each other, modifying the one offset an open file descriptor has.
Use open() to open the file, and use pwrite() to write data to exact offsets.
pwrite() man page:
pwrite() writes up to count bytes from the buffer starting at buf to
the file descriptor fd at offset offset. The file offset is not
changed.

Truncate file in ocaml

How to truncate file to size N in ocaml ?
I don't see a function in Pervasive. The closest thing is "open_trunc" flag which I'm not really sure what it does.
If you're under Unix, you can use
val Unix.truncate : string -> int -> unit
It "runcates the named file to the given size".
But this function is not implemented in the Windows version of OCaml (or more precisely, it is not emulated).
If you're under Windows and want to emulate it, you might be interested in
val really_input : in_channel -> string -> int -> int -> unit
"really_input ic buf pos len reads len characters from channel ic, storing them in string buf, starting at character number pos. Raise End_of_file if the end of file is reached before len characters have been read. Raise Invalid_argument "really_input" if pos and len do not designate a valid substring of buf."
I think you are correct.
open_trunc -Open the named file for writing, and return a new output channel on that file, positionned at the beginning of the file. The file is truncated to zero length if it already exists. It is created if it does not already exists. Raise Sys_error if the file could not be opened.
Refer this link also.
The OS capabilities of Pervasives correspond roughly to what you can do in standard C. There is no function to truncate a file to a specified length in standard C, all you can do is truncate a file to be empty when you open it (exposed through the Open_trunc flag). There is one in Unix/POSIX (truncate), so look for it in the Unix module, which does have a truncate function (or ftruncate for an open file, again following Unix/POSIX).

Is there any way to create dummy file descriptor in linux?

I have opened one file with following way:
fp = fopen("some.txt","r");
Now in this file the 1st some bytes lets say 40 bytes are unnecessary junk of data so I want to remove them. But I cannot delete that data from that file, modify or
create duplicates of that file without that unnecessary data.
So I want to create another dummy FILE pointer which points to the file and when I pass this dummy pointer to any another function that does the following operation:
fseek ( dummy file pointer , 0 , SEEK_SET );
then it should set the file pointer at 40th position in my some.txt.
But the function accepts a file descriptor so i need to pass a file descriptor which will treat the file as those first 40 bytes were never in the file.
In short that dummy descriptor should treat the file as those 40 bytes were not in that file and all positioning operations should be with respect to that 40th byte counting as the is 1st byte.
Easy.
#define CHAR_8_BIT (0)
#define CHAR_16_BIT (1)
#define BIT_WIDTH (CHAR_8_BIT)
#define OFFSET (40)
FILE* fp = fopen("some.txt","r");
FILE* dummy = NULL;
#if (BIT_WIDTH == CHAR_8_BIT)
dummy = fseek (fp, OFFSET*sizeof(char), SEEK_SET);
#else
dummy = fseek (fp, OFFSET*sizeof(wchar_t), SEEK_SET);
#endif
The SEEK_SET macro indicates beginning of file, and depending on whether you are using 8-bit characters (ASCI) or 16-bit characters (eg: UNICODE) you will step 40 CHARACTERS forward from the beginning of your file pointer, and assign that pointer/address to dummy.
Good luck!
These links will likely be helpful as well:
char vs wchar_t
http://www.cplusplus.com/reference/clibrary/cstdio/fseek/
If you want, you can just convert a file descriptor to a file pointer via the fdopen() call.
http://linux.die.net/man/3/fdopen
fseek ( dummy file pointer , 0 , SEEK_SET );
In short that dummy pointer should treat the file as there is no that 40 byte in that file and all position should be with respect to that 40th byte as counting as it is 1st byte.
You have conflicting requirements, you cannot do this with the C API.
SEEK_SET always refers to the absolute position in the file, which means if you want that command to work, you have to modify the file and remove the junk.
On linux you could write a FUSE driver that would present the file like it was starting from the 40th byte, but that's a lot of work. I'm only mentioned this because it's possible to solve the problem you've created, but it would be quite silly to actually do this.
The simplest thing of course would be just to abandon this emulating layer idea you're looking for, and write code that can handle that extra header junk.
If you want to remove the first 40 bytes of a file on the disk without creating another file, then you can copy the content from the 41th byte and onwards into a buffer, then write it back at offset -40. Then use ftruncate (a POSIX library in unistd.h) to truncate at (filesize - 40) offset.
I wrote a small code with what i understood from your question.
#include<stdio.h>
void readIt(FILE *afp)
{
char mystr[100];
while ( fgets (mystr , 100 , afp) != NULL )
puts (mystr);
}
int main()
{
FILE * dfp = NULL;
FILE * fp = fopen("h4.sql","r");
if(fp != NULL)
{
fseek(fp,10,SEEK_SET);
dfp = fp;
readIt(dfp);
fclose(fp);
}
}
The readIt() is reading the file from the 11 byte.
Is this what you are expecting or something else?
I haven't actually tried this, but I think you should be able to use mmap (with the MAP_SHARED option) to get your file mapped into your address space, and then fmemopen to get a FILE* that refers to all but the first 40 bytes of that buffer.
This gives you a FILE* (as you describe in the body of your question), but I believe not a file descriptor (as in the title and elsewhere in the question). The two are not the same, and AFAIK the FILE* created with fmemopen does not have an associated file descriptor.

File processing in c?

I have been given a raw file that holds several jpg images. I have to go through the file, find each jpg image, and put those images each in a separate file. So far I have code that can find each where each image begins and ends. I also have written code that names several file names I can use to put the pictures in. It is an array: char filename[] , that holds the names: image00.jpg - image29.jpg .
What I cannot figure out is how to open a file every time I find an image, an then close that file and open a new one for the next image. Do I need to use fwrite()? Also, each image is in blocks of 512 bytes, so I only have to check for a new image every 512 bytes once I find the first one. Do I need to add that into fwrite?
So, to summarize my questions, I don't understand how to use fwrite(), if that is what I should be using to write to these files.
Also, I do not know how to open the files using the names I have already created.
Thanks in advance for the help. Let me know if I need to post any other code.
Use fopen(rawfilename, "rb"); to open the raw file for reading. and fread to read from it.
Use fopen(outfilename, "wb"); to open output file for writing and fwrite to write to it.
As mentioned in my comment, you are assigning char *[] to char*, use char filename[] = "image00.jpg"; instead.
Don't forget to close each file after you finish its processing (r/w) (look at fclose() at the same site of other links)
Decide how much bytes to read each time by parsing the jpeg header. Use malloc to allocate the amount of bytes needed to be read, and remember, for each allocation of buffer you need to free the allocated buffer later.
Pretty much any book on C programming should cover the functions you need. As MByD pointed out, you'll want to use the functions fopen(), fwrite(), and fclose().
I imagine your code may include fragments that look something like
/* Warning: untested and probably out-of-order code */
...
char **filename = {
"image00.jpg", "image01.jpg", "image02.jpg",
...
"image29.jpg" };
...
int index = 0;
const int blocksize = 512; /* bytes */
...
index++;
...
FILE * output_file = fopen( filename[index], "wb");
fwrite( output_data, 1, blocksize, output_file );
fclose(output_file);
...

MFC problem to copy binary file

I want to copy a binary master file in a new binary file. This file contain nothing but have a predefined size (20000 lines).
Here what i'm doing:
FILE *A_Lire;
FILE *A_Creer;
A_Lire = fopen(MASTERPath,"rb");
A_Creer = fopen(PARTPRGPath, "wb");
fseek(A_Lire,0,SEEK_END);
int end = ftell(A_Lire);
char* buf = (char*)malloc(end);
fread(buf,sizeof(char),end,A_Lire);
fwrite(buf,sizeof(char),end,A_Creer);
fclose(A_Creer);
fclose(A_Lire);
This code create the new file with the good size but this is not exactly the same file because I'm not able to used this new file like the master. Something is different, maybe corrupted, maybe the way to write in the file ???
Do you have any idea ???
I think this is MFC code
Thanks,
when you do fseek(..SEEK_END), the position inside the opened file is at the end, whenever you call fread, you are getting 0 bytes as you're at the end.
Just do a rewind after that:
fseek(A_Lire,0,SEEK_END);
int end = ftell(A_Lire);
fseek(A_Lire,0,SEEK_SET);

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