I am running mkl_lab_solution.c which is an example for using MKL, I can compile it correctly, while I run it, I got Segmentation fault.My runtime is below:
OS is centos 6.3
gcc's version is 4.1.2
mkl is mkl_10.3.12.361
makefile is below
gcc -g -L/opt/intel/composer_xe_2011_sp1.12.361/mkl/lib/intel64 -lmkl_intel_ilp64 -lmkl_intel_lp64 -lmkl_intel_sp2dp -lmkl_intel_thread -lmkl_core -lpthread -L/opt/intel/composer_xe_2011_sp1.12.361/compiler/lib/intel64 -liomp5 -L/usr/lib64 -lstdc++ -I/opt/intel/composer_xe_2011_sp1.12.361/mkl/include -o test mkl-lab-solution.c
Since this works fine on my system, let me point you to possible errors.
First, you need to run . /path/to/intel/compilervars.sh intel64 such all environment variables are set, like MKLROOT.
Second, check on intel mkl link line advisor for the options on your system. So reading your compile command I guess: linux, gnu compiler, dynamic linked, 64 bit target architecture, 64 bit long pointer, multithreaded, intel omp library.
These settings give me:
linker options:
-L$(MKLROOT)/lib/intel64 -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm
compile options:
-DMKL_ILP64 -m64 -I$(MKLROOT)/include
For whatever reason the brackets around MKLROOT don't work on bash, so just remove them.
Next remember to put all compile options in front of linker options. The final command line should read like this:
gcc mkl-lab-solution.c -DMKL_ILP64 -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm
Since you get runtime errors, I suspect that you are linking the Intel MKL libraries with objects compiled for different interface layers.
Related
I am trying to debug my c program using
gcc -g -lm -lpthread -std=c99 -w terminalproject.c
and then
gdb a.out
but when I type
layout next, it shows me assembly code not c code.
How to switch to C code in layout?
EDIT: I am using Red Hat Linux 6, I tried to run it in Ubuntu, It is showing C code.
p.s my code has pthreads in it.
This command:
gcc -g -lm -lpthread -std=c99 -w terminalproject.c
is wrong. Use this instead:
gcc -g -std=c99 -pthread terminalproject.c -lm
You should never use -w (suppress all warnings) flag, unless you desire painful debugging sessions.
layout src says No source Available.
This likely means that you are using updated GCC, but ancient GDB. Try building recent GDB release from source -- it's usually not hard.
Problem with linking portaudio into an c program on Linux.
System: Linux Ubuntu 20.4 i5 16 GB
ALSA and pulseaudio were preinstralled.
gcc (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0
gcc -Wall wm_1.c -lm libportaudio.a -o wm_1
The linker gives me more than 100 error messages all of type "undefined reference"
Here 2 examples out of >100
/home/max/Desktop/dev/portaudio/src/hostapi/alsa/pa_linux_alsa.c:504: undefined reference to snd_pcm_status_get_delay' /home/max/Desktop/dev/portaudio/src/hostapi/oss/pa_unix_oss.c:1778: undefined reference to __pthread_unregister_cancel'
So its obvious that the named parameter/function can not be found.
The error messages all point to source files in the source directory (the directory of the portaudio
package I downloaded to creatie the libs which were all created without error.
The libs are in /usr/local/..
libportaudio.a libportaudio.la libportaudio.so libportaudio.so.2 libportaudio.so.2.0.0 pkgconfig python3.8
and I copied libportaudio.a into the project directory. The lib has a a size of 1.1 MB .
if I use the dynamic libportaudio.so I get the error messages at run time.
I suspect that something went totally wrong with creating the libraries but I have no idea how to solve that
Other option:
Linking parameter or files missing ?
Header file ?
The same program compiles, links and runs without any problem on a iMac OS 10.13.6
where I used the dynamic lib .dylib.
gcc -v wm_1.c libportaudio.dylib -o wm_1
From the documentation:
Note that you will usually need to link with the approriate libraries that you used, such as ALSA and JACK, as well as with librt and libpthread. For example:
gcc main.c libportaudio.a -lrt -lm -lasound -ljack -pthread -o YOUR_BINARY
A little googling goes a long way...
This works:
gcc -Wall wm_1.c -lm libportaudio.a -lasound -pthread -o test.
gcc main.c libportaudio.a -lrt -lm -lasound -ljack -pthread -o YOUR_BINARY
I used that page and the command line at the begin using all 3 parameter but got errors, probably of misspelling, so I gave up on that (also because on the Mac OS it was not necessary). It now links without errors using -lasound and -pthread only (-pthread alone gives still errors and the use/not use of -ljack makes no difference).
I get some errors when I run the program but probably because of missing or wrong ALSA parameter settings. I found -pthread but I could not find -ljack and -lasound.
So the question: what are this 2 parameter doing?
It must be link parameter, but where is the documentation, I searched ld and gcc and did not find anything, while -pthread is documented.
I am trying to create an C application on Debian GNU/Linux which uses the PortAudio interface. To do this I must compile my program with gcc -lrt -lasound -ljack -lpthread -o YOUR_BINARY main.c libportaudio.a from this docs.
For this I installed libasound2-dev, and I checked where the files are using apt-file search libasound.so, this is the output:
lib32asound2: /usr/lib32/libasound.so.2
lib32asound2: /usr/lib32/libasound.so.2.0.0
lib32asound2-dev: /usr/lib32/libasound.so
libasound2: /usr/lib/x86_64-linux-gnu/libasound.so.2
libasound2: /usr/lib/x86_64-linux-gnu/libasound.so.2.0.0
libasound2-dev: /usr/lib/x86_64-linux-gnu/libasound.so
So the libasound should be installed correctly, but when I compile my program with this makefile:
DMXTest: main.c libdmx.a
gcc -static -Wall main.c -L. -ldmx -lusb -lrt -lasound -ljack -lfftw3 -g -o main libportaudio.a
I get the following error: /usr/bin/ld: cannot find -lasound.
How can I link this library correctly?
You don't have libasound.a for -static, you will need that, or you can almost certainly just remove -static from the Makefile (likely in LDFLAGS or CFLAGS).
There's is a related Debian bug 522544, and a related Ubuntu bug #993959.
You may be able to build your own libasound from source, though as it also uses other libraries (notably libpthread.so, librt.so and libdl.so) I suspect it may remove some functionality when you build it statically, though it's supported with ./configure --enable-static at build time
(or try --enable-shared=no --enable-static=yes).
FWIW, the use of static binaries is "discouraged" by the glibc maintainers, though I don't agree...
To compile my code i used the following command
gcc -o rec_mic rec_mic.c -lasound
and it works perfectly, without create my own static library.
My program links to both PETSc and gsl, and both libraries were compiled with icc. Here's the link command:
/usr/local/mpich2/bin/mpicc -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g3 -I/usr/local/gsl-icc-1.15/include/ -I/usr/local/gsl-icc-1.15/include/ -L/usr/local/gsl-icc-1.15/lib/ -lgsl -lgslcblas prog_name.o -L/usr/local/petsc-3.2-p6/lib -lpetsc -lX11 -lpthread -llapack -lblas -L/central/intel/Compiler-11.1.072/mkl/lib/em64t -L/central/intel/Compiler-11.1.072/lib/intel64 -L/central/intel/Compiler-11.1.072/tbb/intel64/cc3.4.3_libc2.3.4_kernel2.6.9/lib -L/usr/lib/gcc/x86_64-redhat-linux/4.1.2 -ldl -lgcc_s -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -lm -lstdc++ -lstdc++ -ldl -lgcc_s -ldl -o prog_name
MPICH_CC is set to icc, so mpicc calls the intel compiler.
When I try to link to the gsl .so file, I get the following errors:
gsl-icc-1.15/lib/libgsl.so: undefined reference to `__intel_sse2_strcpy'
gsl-icc-1.15/lib/libgsl.so: undefined reference to `__intel_sse2_strchr'
gsl-icc-1.15/lib/libgsl.so: undefined reference to `__intel_sse2_strncpy'
What could be the cause of this error? Is gsl incompatible with the intel compiler?
What could be the cause of this error?
You didn't show us your link command, but my crystall ball tells me that you are trying to link libgsl.so with ld (or perhaps with gcc), instead of icc.
In general, one should never link anything directly with ld on UNIX. Always use appropriate compiler driver (icc in this case).
I also get the same error message when linking some code with gcc against a PETSc version that was compiled with icc. Even more, when using the newest Intel 12.x compiler for the final code, and compiling PETSc with Intel 11.x results in the same error message as Intel 12.x uses 11.x.
So check, that mpicc really use the Intel 11.1.072 compiler. Check for mpic++ -show and which icc.
Maybe the intel environment not set.
Try the following environment setting:
source /etc/Intel_Compiler/10.0/XXXX/iccvars_intel64.sh
source /etc/Intel_Compiler/10.0/XXXX/ifortvars_intel64.sh
make the folder to your Intel Compiler folder. Some version's environment setting is different, you can also try:
source /etc/Intel_Compiler/10.0/XXXX/iccvars.sh intel64
source /etc/Intel_Compiler/10.0/XXXX/ifortvars.sh intel64
Hope helpfully.
I want clang to compile my C/C++ code to LLVM bitcode rather than a binary executable. How can I achieve that?
And if I have the LLVM bitcode, how can I further compile it to a binary executable?
I want to add some of my own code to the LLVM bitcode before compiling to a binary executable.
Given some C/C++ file foo.c:
> clang -S -emit-llvm foo.c
Produces foo.ll which is an LLVM IR file.
The -emit-llvm option can also be passed to the compiler front-end directly, and not the driver by means of -cc1:
> clang -cc1 foo.c -emit-llvm
Produces foo.ll with the IR. -cc1 adds some cool options like -ast-print. Check out -cc1 --help for more details.
To compile LLVM IR further to assembly, use the llc tool:
> llc foo.ll
Produces foo.s with assembly (defaulting to the machine architecture you run it on). llc is one of the LLVM tools - here is its documentation.
Use
clang -emit-llvm -o foo.bc -c foo.c
clang -o foo foo.bc
If you have multiple source files, you probably actually want to use link-time-optimization to output one bitcode file for the entire program. The other answers given will cause you to end up with a bitcode file for every source file.
Instead, you want to compile with link-time-optimization
clang -flto -c program1.c -o program1.o
clang -flto -c program2.c -o program2.o
and for the final linking step, add the argument -Wl,-plugin-opt=also-emit-llvm
clang -flto -Wl,-plugin-opt=also-emit-llvm program1.o program2.o -o program
This gives you both a compiled program and the bitcode corresponding to it (program.bc). You can then modify program.bc in any way you like, and recompile the modified program at any time by doing
clang program.bc -o program
although be aware that you need to include any necessary linker flags (for external libraries, etc) at this step again.
Note that you need to be using the gold linker for this to work. If you want to force clang to use a specific linker, create a symlink to that linker named "ld" in a special directory called "fakebin" somewhere on your computer, and add the option
-B/home/jeremy/fakebin
to any linking steps above.
If you have multiple files and you don't want to have to type each file, I would recommend that you follow these simple steps (I am using clang-3.8 but you can use any other version):
generate all .ll files
clang-3.8 -S -emit-llvm *.c
link them into a single one
llvm-link-3.8 -S -v -o single.ll *.ll
(Optional) Optimise your code (maybe some alias analysis)
opt-3.8 -S -O3 -aa -basicaaa -tbaa -licm single.ll -o optimised.ll
Generate assembly (generates a optimised.s file)
llc-3.8 optimised.ll
Create executable (named a.out)
clang-3.8 optimised.s
Did you read clang documentation ? You're probably looking for -emit-llvm.