I have a .c file compiled and would like to run via a cron job but I end up getting this error:
/bin/sh: /usr/local/bin/get1Receive.c: Permission denied.
What is causing this error and how do I fix it?
Should I be running the .c file in cron or a different compiled file?
Results from /tmp/myvars
GROUPS=()
HOME=/root
HOSTNAME=capture
HOSTTYPE=x86_64
IFS='
'
LOGNAME=root
MACHTYPE=x86_64-redhat-linux-gnu
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/bin:/bin
POSIXLY_CORRECT=y
PPID=11086
PS4='+ '
PWD=/root
SHELL=/bin/sh
SHELLOPTS=braceexpand:hashall:interactive-comments:posix
SHLVL=1
TERM=dumb
UID=0
USER=root
_=/bin/sh
Results from file get1Receive.c
file get1Receive.c
get1Receive.c: ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.18, not stripped
Snippet of codes.
sprintf(queryBuf1,"SELECT ipDest, macDest,portDest, sum(totalBits) FROM dataReceive WHERE timeStampID between '%s' And '%s' GROUP BY ipDest, macDest, portDest ",buff1,buff2);
printf("\nQuery receive %s",queryBuf1);
if(mysql_query(localConn, queryBuf1))
{
//fprintf(stderr, "%s\n", mysql_error(localConn));
printf("Error in first query of select %s\n",mysql_error(localConn));
exit(1);
}
localRes1 = mysql_store_result(localConn);
int num_fields = mysql_num_fields(localRes1);
printf("\nNumf of fields : %d",num_fields);
printf("\nNof of row : %lu",mysql_num_rows(localRes1));
If the output of this command:
file get1Receive1.c
shows that file name to be a valid executable that part is very unusual, but okay.
Assuming you are using biz14 (or your real username's ) crontab try this:
use the command crontab -e to create this line in your crontab:
* * * * * set > /tmp/myvars
Wait a few minutes, go back into crontab -e and delete that entry.
Use the set command from the command line to see what variables and aliases exist.
Compare that with that you see in /tmp/myvars You have to change how your C code executes by changing the variables and aliases the cron job runs with.
If you are running the cron job in someone else's crontab, then you have a bigger problem. Check file permissions on get1Receive1.c. and the directory it lives in. That other user (the one who wons the crontab) has to have permissions set on your directory and get1Receive1.c so the job can run.
Example crontab entry:
0 10 * * 1-5 /path/to/get1Receive1.c > /tmp/outputfile
Read /tmp/outputfile to see what you got. You are using printf in your code. printf only writes to the controlling terminal. There is no controlling terminal, so redirect the printf stuff to a file.
Last effort on this problem:
Check return codes on EVERYTHING. All C functions like fread(), any db function, etc. If a return code gives a fail response ( these are different for different function calls) then report the error number the line number and function - gcc provides LINE and func. Example:
printf("error on line %d in my code %s, error message =%s\n", __LINE__, __func__, [string of error message]);
If you do not check return codes you are writing very poor C code.
CHECK return codes, please, now!
Permission wise you could have two issues.
1. The 'c' file's permissions don't allow who you are running it as to run it.
2. You are running the cron with a script which doesn't have permissions.
Here's a helpful post: How to give permission for the cron job file?
The fact that you are running a 'c' file and referring to it as a script makes me think you're using C shell and not writing it as a C language program which would need to be compiled and have the generated executable run by the cron. If you're not using gcc or have never called gcc on your 'C' script then it's not C and call it C shell to avoid confusion.
Related
I am developing a shared-library L which is used by an other system service S. In my program I need to call a small program P, which uses Oracle shared libraries.
The small program P is packaged and installed correctly, and the environment variables, such as PATH,LD_LIBRARY_PATH and ORACLE_HOME are set correctly. I can run P on command line without any problem.
But when service S call my library L which runs the small program P via system(), it gives me a return code 127. I've googled, people says it's a command not found error, probably a PATH issue, so I've tried with absolute path like the following
int status = system("/usr/bin/myprog --args");
if (status < 0) { ... }
ret = WEXITSTATUS(status);
ret still equals 127.
Any idea please ? Thank you.
Update
It turns out that the service S is launched via command daemon, in its init.d script, I have found the following line:
daemon /usr/bin/myserv
if I export explicitly all my environment variables (PATH, ORACLE_HOME and LD_LIBRARY_PATH), it works. I don't know if daemon eliminates my environment variables.
this excerpt from the man page for system()
-----------------------------------------------------------------
The value returned is -1 on error (e.g., fork(2) failed), and the
return status of the command otherwise.
This latter return status is
in the format specified in wait(2).
Thus, the exit code of the command
will be WEXITSTATUS(status).
In case /bin/sh could not be executed,
the exit status will be that of a command that does exit(127)."
-----------------------------------------------------------------
indicates the 127 means that /bin/sh could not be executed.
Well, I have found the answer:How to make unix service see environment variables?,the environment variables are removed in init.d script.
I am working on a remote red-hat server and there I'm developing a c application to insert data in to a remote oracle database. So first i installed the OCI instant client rpm on the server and tried to compile a sample program. after certain linkages I could compile it. But then when I am going to run it. It exits giving an error saying
ORA-12162: TNS:net service name is incorrectly specified
The sample code I used is from the blog (refer to this code in case you need to clarify the things.where I’m quoting only few pieces to this post) René Nyffenegger's collection of things on the web
René Nyffenegger on Oracle
(refer to this code in case you need to clarify the things.where I’m quoting only few pieces to this post)
In the code I added some prints to check for the error And it seems like It gets stuck in the OCIServerAttach() function r gives a printed walue of -1
r=OCIServerAttach(srv, err, dbname, strlen(dbname), (ub4) OCI_DEFAULT);
printf("r value %d",r);
if (r != OCI_SUCCESS) {
checkerr(err, r);
goto clean_up;
}
Another point is that in the compilation process it gives a warning saying that a certain libry is not include. but the exicutable file is created. Here is the massage I get in the compilation process.
[laksithe#loancust ~]$ gcc -L$ORACLE_HOME/lib/ -L$ORACLE_HOME/rdbms/lib/ -o oci_test oci_test.o -L/usr/lib/oracle/12.1/client64/lib -lclntsh `cat $ORACLE_HOME/lib/sysliblist`
cat: /lib/sysliblist: No such file or directory
Going through the web I found that by creating a tnsnames.ora file with the connection details I could solve the problem. But even It didn't work for me. Here is the link for that blog blog
It has been a week since this error and I cold'nt solve it. could someone please help me.
connection string format I used is abc.ghi.com:1521/JKLMN
My recommendation is to bypass tnsnames completely. Oracle has always allowed you to put in the direct connection details, but EZConnect makes that even easier.
When you format your connection string, instead of listing the TNS name, use the actual connection properties in the following format:
servername:port/service name
For Example
MyOracle.MyCompany.Com:1521/SalesReporting
Your connection string might also require direct=true, but I'm honestly not sure.
I like the idea of tnsnames, but it's a double edged sword. When it works, it's great. When it doesn't, you want to throw something. With EZConnect, it always works.
By the way, if you don't know the properties of the three items above, find a machine that connect via tnsnames and:
tnsping <your TNS-named database>
I am trying to run ADNI .mnc image in MATLAB
I added folder emma-master, niak-0.7.1-ammo, mia and niak-0.7.1-ammo to my path. All these folders are located in
D:\EMINA BURCH\PhD Thesis\MATLAB Packages
But when I want to open ._bq_t_15T.mnc located also in D:\EMINA BURCH\PhD Thesis\MATLAB Packages
that is h = openimage('._bq_n_15T.mnc')
I get the following error
Error using miinquire (line 145)
Error getting image dimensions from file D:\EMINA BURCH\PhD Thesis\MATLAB Packages._bq_n_15T.mnc
Error in openimage (line 173)
DimSizes = miinquire (filename, 'imagesize');
When I enter debug mode in minquire function after the line
[stat,out] = system(['mincinfo -vardims image ' minc_file]);
I get stat = 1 and out = 'mincinfo' is not recognized as an internal or external command, operable program or batch file.
May You, please help me with this issue.
system isn't able to automatically recognise the different requirements that might be needed to run the same system command on different operating systems. Using commands like ispc, isunix, ismac and computer, you can automatically check and call different versions of the commands as appropriate:
if ispc
[stat,out] = system(['mincinfo.exe -vardims image ' minc_file]);
else
[stat,out] = system(['mincinfo -vardims image ' minc_file]);
end
Of course, you also have to have the appropriate program on your MATLAB path for this to work.
I'm not an expert C programmer. I'm having trouble debugging a program using GDB. (The bug I am trying to fix is unrelated to the problem I am asking about here.) My problem is that the program runs fine when I run the binary directly from a shell, but the program crashes when I run it using GDB.
Here is some information about the program which may be useful: it is a 20+ year old piece of database software, originally written for Solaris (I think) but since ported to Linux, which is setuid (but not to root, thank god).
The program crashes in GDB when trying to open a file for writing. Using GDB, I was able to determine that crash occurs because the following system call fails:
fd = open(path, O_WRONLY|O_CREAT|O_TRUNC, 0644);
For clarification: path is the path to a lockfile which should not exist. If the lock file exists, then the program shuts down cleanly before it even reaches this system call.
I do not understand why this system call would fail, since 1) The user this program runs as has rwx permissions on the directory containing path (I have verified this by examining the value of the variable stored in path), and 2) the program successfully opens the file for writing when I am not using GDB to debug it.
Are there any reasons why I cannot
The key turns out to be this bit:
... is setuid (but not to root, thank god).
When you run a program under (any) debugger (using any of the stop-and-inspect/modify program facilities), the kernel disables setuid-ness, even for non-root setuid.
If you think about this a bit it makes sense. Consider a game that keeps a "high scores" file, and uses "setuid games" to do this, with:
fd = open(GAME_SCORE_FILE, open_mode, file_mode);
score_data = read_scores(fd);
/* set breakpoint here or so */
if (check_for_new_high_score(current_score, score_data)) {
printf("congratulations, you've entered the High Scores records!\n");
save_scores(fd, score_data);
}
close(fd);
Access to the "high scores" file is protected by file permissions: only the "games" user can write to it.
If you run the game under a debugger, though, you can set a breakpoint at the marked line, and set the current_score data to some super-high value and then resume the program.
To avoid allowing debuggers to corrupt the internal data of setuid programs, the kernel simply disables setuid-ness when running code with debug facilities enabled. If you can su (or sudo or whatever) to the user, indicating that you have permission regardless of any debugging, you can then run gdb itself as that user, so that the program runs as the user it "would have" setuid-ed to.
Is it possible that I can view the line number and file name (for my program running with ltrace/strace) along with the library call/system call information.
Eg:
code section :: ptr = malloc(sizeof(int)*5); (file:code.c, line:21)
ltrace or any other tool: malloc(20) :: code.c::21
I have tried all the options of ltrace/strace but cannot figure out a way to get this info.
If not possible through ltrace/strace, do we have any parallel tool option for GNU/Linux?
You may be able to use the -i option (to output the instruction pointer at the time of the call) in strace and ltrace, combined with addr2line to resolve the calls to lines of code.
No It's not possible. Why don't you use gdb for this purpose?
When you are compiling application with gcc use -ggdb flags to get debugger info into your program and then run your program with gdb or equivalent frontend (ddd or similar)
Here is quick gdb manual to help you out a bit.
http://www.cs.cmu.edu/~gilpin/tutorial/
You can use strace-plus that can collects stack traces associated with each system call.
http://code.google.com/p/strace-plus/
Pretty old question, but I found a way to accomplish what OP wanted:
First use strace with -k option, which will generate a stack trace like this:
openat(AT_FDCWD, NULL, O_RDONLY) = -1 EFAULT (Bad address)
> /usr/lib/libc-2.33.so(__open64+0x5b) [0xefeab]
> /usr/lib/libc-2.33.so(_IO_file_open+0x26) [0x816f6]
> /usr/lib/libc-2.33.so(_IO_file_fopen+0x10a) [0x818ca]
> /usr/lib/libc-2.33.so(__fopen_internal+0x7d) [0x7527d]
> /mnt/r/build/tests/main(main+0x90) [0x1330]
> /usr/lib/libc-2.33.so(__libc_start_main+0xd5) [0x27b25]
> /mnt/r/build/tests/main(_start+0x2e) [0x114e]
The address of each function call are displayed at the end of each line, and you can paste it to addr2line to retrieve the file and line. For example, we want to locate the call in main() (fifth line of the stack trace).
addr2line -e tests/main 0x1330
It will show something like this:
/mnt/r/main.c:55