How to store and retrieve large numbers of data points for graphical visualization? - database

I'm thinking about building a web-based data logging and visualization service. The basic idea is that at some timed interval something (e.g. a sensor) reports a value (e.g. temperature) to the server. The server records this value into a database. There would be a web-based UI that allows me to view this data on a time-based graph. Ideally this graph would have various resolutions (last 30 seconds, last week, last year, etc). In a super ideal world, I would be able to zoom into the data for any point in time.
The problem is that the sensors are going to generate enormous amounts of data. For example, a sensor that reports a value every 5 seconds will generate about 18k values a day. I'm imagining a system that has thousands of sensors. Over time, this becomes lots of data.
The naive solution is to throw this data into a relational database and retrieve it in the various ways I want, but that won't scale.
The simple solution is to reduce the amount of data by performing periodic roll-ups of the data. New data might go into a table that has data points every 5 seconds. Every hour, some system pumps this data into another table that has data points every minute and the original data is deleted. This repeats for a few levels. The downside to this is that the further back in time you go, the less detailed the data is. That's probably fine. I would imagine that I would need enormous amounts of hardware to support full resolution of data over all time as compared to a system with this sort of rollup.
Is there a better way to do this? Is there an existing solution? I have to imagine this is a fairly common problem.

You probably want a fixed sized database like RRDTool: http://oss.oetiker.ch/rrdtool/
Also Graphite is built on top of a similar datastore implementation: http://graphite.wikidot.com/

Related

Time series database "metrics limit"?

I'd like to know if a time-series database will crumble with this scenario:
I have tens of thousands of IoTs sending 4 different values each 5min.
I will query those values for each IoT, for certain time spans. My question is:
Is a tsdb approach feasible and scalable up to, e.g., a million IoTs, having metrics like:
iot.key1.value1
iot.key1.value2
iot.key1.value3
iot.key1.value4
iot.key2.value1
.
.
.
iot.key1000000.value4
? Or are they way too much "amount of metrics"?
The retention policy will be 2 years, with possible roll ups maybe after (TBA) months. But I think this consideration only matters for disk size afaik.
Right now I'm using graphite
A reporting frequency of five minutes that should be fairly manageable, just be sure to set your storage schema to five-minutes being the smallest resolution data in order to save space, as you won't be needing to hold on to data at shorter periods.
With that said, scaling a graphite cluster to meet your needs isn't easy as Whisper isn't optimized for this. There are several resources/stories where others have shared their dismay trying to achieve this, for example: here and here
There are other limitations to consider too, Whisper is configured in such a way that it can record only one datapoint per timestamp, and the last datapoint received "wins". This might not be an issue to you now, but later down the road you might find that you need to increase the datapoint reporting requency to get a better insight into your data.
Therein comes the question, how can I get around that? Often, StatsD is the answer - it's an aggregator that takes your individual metrics over a defined period of time, and churns out a histogram-like set of metrics with different statistical derivatives of your data (minimum, maximum, X-percentile, and so on). Suddenly you're then faced with the prospect of managing a Graphite instance or cluster, one (or more) StatsD service, and that's before you even get to the fun part of visualising your data: Grafana is often used here and also requires you to set up and maintain.
Conversely, assuming you will maintain that reporting frequency, but increase the number of devices (as you mentioned), you might find another component of your Graphite stack - Carbon-relay - running into some bottlenecking issues (as described here).
I work at MetricFire, formerly Hosted Graphite, where we had a lot of these considerations in mind when building our product/service. Collectively we process millions of datapoints per second across hundreds of accounts. Data is rolled up and stored at four resolutions: 5-seconds, 30-seconds, 5-minute, 1-hour, where each resolution is available for 24 hours, 3 days, six months and two years, respectively.
A key component of our set-up is that our storage is not built on the typical Whisper backend - instead we use a custom-built data store using Riak allowing us to do many things: scale easily and aggregate datapoints per metric into Data Views, to name a few. That article about Data Views was written by one of our engineers and goes into some detail about the decisions we made when building our storage layer.

Suggestions on how to store and retrieve time-series data

I am currently working on a project that requires us to store a large amount of time series data, but more importantly, retrieve large amounts of it quick.
There will be N devices (>10,000) which will periodically send data to the system, lets say every 5 seconds. This data will quickly build up, but we are generally only interested in the most recent data, and want to compact the older data. We don't want to remove it, as it is still useful, but instead of having thousands of data point for a day, we might save just 5 or 10 after N days/weeks/months have passed.
Specifically we want to be able to fetch sampled data over a large time period, say a year or two. There might be millions of points here, but we just want a small, linearly distributed, sample of this data.
Today we are experimenting with influxdb, which initially seemed like an alright solution. It was fast enough and allows us to store our data in a reasonable structure, but we have found that it is not completely satisfactory. We were unable to perform the sample query described above and in general the system does not feel mature enough for us.
Any advice on how we can proceed, or alternative solutions, is much appreciated.
You might be interested in looking at TimescaleDB:
https://github.com/timescale/timescaledb
It builds a time-series DB on top of Postgres and so offers full SQL support, as well as generally the Postgres ecosystem/reliability. This can give you a lot greater query flexibility, which sounds like you want.
In terms of your specific use case, there would really be two solutions.
First, what people typically would do is to create two "hypertables", one for raw data, another for sampled data. These hypertables look like standard tables to the user, although heavily partitioned under the covers for much better scalability (e.g., 20x insert throughput vs. postgres for large table sizes).
Then you basically do a roll-up from the raw to the sampled table, and use a different data retention policy on each (so you keep raw data for say 1 month, with sampled data for years).
http://docs.timescale.com/getting-started/setup/starting-from-scratch
http://docs.timescale.com/api/data-retention
Second, you can go with a single hypertable, and then just schedule a normal SQL query to delete individual rows from data that's older than a certain time period.
We might even in the future add better first-class support for this latter approach if it becomes a common-enough requested feature, although most use cases we've encountered to date seemed more focused on #1, esp. in order to to keep statistical data about removed data-points, as opposed to just straight samples.
(Disclaimer: I'm one of the authors of TimescaleDB.)

Best way to access averaged static data in a Database (Hibernate, Postgres)

Currently I have a project (written in Java) that reads sensor output from a micro controller and writes it across several Postgres tables every second using Hibernate. In total I write about 130 columns worth of data every second. Once the data is written it will stay static forever.This system seems to perform fine under the current conditions.
My question is regarding the best way to query and average this data in the future. There are several approaches I think would be viable but am looking for input as to which one would scale and perform best.
Being that we gather and write data every second we end up generating more than 2.5 million rows per month. We currently plot this data via a JDBC select statement writing to a JChart2D (i.e. SELECT pressure, temperature, speed FROM data WHERE time_stamp BETWEEN startTime AND endTime). The user must be careful to not specify too long of a time period (startTimem and endTime delta < 1 day) or else they will have to wait several minutes (or longer) for the query to run.
The future goal would be to have a user interface similar to the Google visualization API that powers Google Finance. With regards to time scaling, i.e. the longer the time period the "smoother" (or more averaged) the data becomes.
Options I have considered are as follows:
Option A: Use the SQL avg function to return the averaged data points to the user. I think this option would get expensive if the user asks to see the data for say half a year. I imagine the interface in this scenario would scale the amount of rows to average based on the user request. I.E. if the user asks for a month of data the interface will request an avg of every 86400 rows which would return ~30 data points whereas if the user asks for a day of data the interface will request an avg of every 2880 rows which will also return 30 data points but of more granularity.
Option B: Use SQL to return all of the rows in a time interval and use the Java interface to average out the data. I have briefly tested this for kicks and I know it is expensive because I'm returning 86400 rows/day of interval time requested. I don't think this is a viable option unless there's something I'm not considering when performing the SQL select.
Option C: Since all this data is static once it is written, I have considered using the Java program (with Hibernate) to also write tables of averages along with the data it is currently writing. In this option, I have several java classes that "accumulate" data then average it and write it to a table at a specified interval (5 seconds, 30 seconds, 1 minute, 1 hour, 6 hours and so on). The future user interface plotting program would take the interval of time specified by the user and determine which table of averages to query. This option seems like it would create a lot of redundancy and take a lot more storage space but (in my mind) would yield the best performance?
Option D: Suggestions from the more experienced community?
Option A won't tend to scale very well once you have large quantities of data to pass over; Option B will probably tend to start relatively slow compared to A and scale even more poorly. Option C is a technique generally referred to as "materialized views", and you might want to implement this one way or another for best performance and scalability. While PostgreSQL doesn't yet support declarative materialized views (but I'm working on that this year, personally), there are ways to get there through triggers and/or scheduled jobs.
To keep the inserts fast, you probably don't want to try to maintain any views off of triggers on the primary table. What you might want to do is to periodically summarize detail into summary tables from crontab jobs (or similar). You might also want to create views to show summary data by using the summary tables which have been created, combined with detail table where the summary table doesn't exist.
The materialized view approach would probably work better for you if you partition your raw data by date range. That's probably a really good idea anyway.
http://www.postgresql.org/docs/current/static/ddl-partitioning.html

Inspiration needed: Selecting large amounts of data for a highscore

I need some inspiration for a solution...
We are running an online game with around 80.000 active users - we are hoping to expand this and are therefore setting a target of achieving up to 1-500.000 users.
The game includes a highscore for all the users, which is based on a large set of data. This data needs to be processed in code to calculate the values for each user.
After the values are calculated we need to rank the users, and write the data to a highscore table.
My problem is that in order to generate a highscore for 500.000 users we need to load data from the database in the order of 25-30.000.000 rows totalling around 1.5-2gb of raw data. Also, in order to rank the values we need to have the total set of values.
Also we need to generate the highscore as often as possible - preferably every 30 minutes.
Now we could just use brute force - load the 30 mio records every 30 minutes, calculate the values and rank them, and write them in to the database, but I'm worried about the strain this will cause on the database, the application server and the network - and if it's even possible.
I'm thinking the solution to this might be to break up the problem some how, but I can't see how. So I'm seeking for some inspiration on possible alternative solutions based on this information:
We need a complete highscore of all ~500.000 teams - we can't (won't unless absolutely necessary) shard it.
I'm assuming that there is no way to rank users without having a list of all users values.
Calculating the value for each team has to be done in code - we can't do it in SQL alone.
Our current method loads each user's data individually (3 calls to the database) to calculate the value - it takes around 20 minutes to load data and generate the highscore 25.000 users which is too slow if this should scale to 500.000.
I'm assuming that hardware size will not an issue (within reasonable limits)
We are already using memcached to store and retrieve cached data
Any suggestions, links to good articles about similar issues are welcome.
Interesting problem. In my experience, batch processes should only be used as a last resort. You are usually better off having your software calculate values as it inserts/updates the database with the new data. For your scenario, this would mean that it should run the score calculation code every time it inserts or updates any of the data that goes into calculating the team's score. Store the calculated value in the DB with the team's record. Put an index on the calculated value field. You can then ask the database to sort on that field and it will be relatively fast. Even with millions of records, it should be able to return the top n records in O(n) time or better. I don't think you'll even need a high scores table at all, since the query will be fast enough (unless you have some other need for the high scores table other than as a cache). This solution also gives you real-time results.
Assuming that most of your 2GB of data is not changing that frequently you can calculate and cache (in db or elsewhere) the totals each day and then just add the difference based on new records provided since the last calculation.
In postgresql you could cluster the table on the column that represents when the record was inserted and create an index on that column. You can then make calculations on recent data without having to scan the entire table.
First and formost:
The computation has to take place somewhere.
User experience impact should be as low as possible.
One possible solution is:
Replicate (mirror) the database in real time.
Pull the data from the mirrored DB.
Do the analysis on the mirror or on a third, dedicated, machine.
Push the results to the main database.
Results are still going to take a while, but at least performance won't be impacted as much.
How about saving those scores in a database, and then simply query the database for the top scores (so that the computation is done on the server side, not on the client side.. and thus there is no need to move the millions of records).
It sounds pretty straight forward... unless I'm missing your point... let me know.
Calculate and store the score of each active team on a rolling basis. Once you've stored the score, you should be able to do the sorting/ordering/retrieval in the SQL. Why is this not an option?
It might prove fruitless, but I'd at least take a gander at the way sorting is done on a lower level and see if you can't manage to get some inspiration from it. You might be able to grab more manageable amounts of data for processing at a time.
Have you run tests to see whether or not your concerns with the data size are valid? On a mid-range server throwing around 2GB isn't too difficult if the software is optimized for it.
Seems to me this is clearly a job for chacheing, because you should be able to keep the half-million score records semi-local, if not in RAM. Every time you update data in the big DB, make the corresponding adjustment to the local score record.
Sorting the local score records should be trivial. (They are nearly in order to begin with.)
If you only need to know the top 100-or-so scores, then the sorting is even easier. All you have to do is scan the list and insertion-sort each element into a 100-element list. If the element is lower than the first element, which it is 99.98% of the time, you don't have to do anything.
Then run a big update from the whole DB once every day or so, just to eliminate any creeping inconsistencies.

Storing Signals in a Database

I'm designing an application that receives information from roughly 100k sensors that measure time-series data. Each sensor measures a single integer data point once every 15 minutes, saves a log of these values, and sends that log to my application once every 4 hours. My application should maintain about 5 years of historical data. The packet I receive once every 4 hours is of the following structure:
Data and time of the sequence start
Number of samples to arrive (assume this is fixed for the sake of simplicity, although in practice there may be partials)
The sequence of samples, each of exactly 4 bytes
My application's main usage scenario is showing graphs of composite signals at certain dates. When I say "composite" signals I mean that for example I need to show the result of adding Sensor A's signal to Sensor B's signal and subtracting Sensor C's signal.
My dilemma is how to store this time-series data in my database. I see two options, assuming I use a relational database:
Store every sample in a row of its own: when I receive a signal, break it to samples, and store each sample separately with its timestamp. Assume the timestamps can be normalized across signals.
Store every 4-hour signal as a separate row with its starting time. In this case, whenever a signal arrives, I just add it as a BLOB to the database.
There are obvious pros and cons for each of the options, including storage size, performance, and complexity of the code "above" the database.
I wondered if there are best practices for such cases.
Many thanks.
Storing each sample in it's own row sounds simple and logical to me. Don't be too hasty to optimize unless there is actually a good reason for it. Maybe you should do some tests with dummy data to see if any optimization is really necessary.
I think storing the data in the form that makes it easiest to carry out your main goal is likely the least painful overall. In this case, it's likely the more efficient as well.
Since your main goal appears to be to display the information in interesting and flexible ways I'd go with separate rows for each data point. I presume most of the effort required to write this program well is likely on the display side, you should minimize the complexity on that side as much as possible.
Storing data in BLOBs is good if the content isn't relevent and you would never want to run queries against it. In this case, your data will be the contents of the database, and therefore, very relevent.
I think you should:
1.Store every sample in a row of its own: when I receive a signal, break it to samples, and store each sample separately with its timestamp. Assume the timestamps can be normalized across signals.
I see two database operations here: the first is to store the data as it comes in, and the second is to retrieve the data in a (potentially large) number of ways.
As Kieveli says, since you'll be using discrete parts of the data (as opposed to all of the data all at once), storing it as a blob won't help you when it comes time to read it. So for the first task, storing the data line by line would be optimal.
This might also be "good enough" when querying the data. However, if performance is an issue, and/or if you get massive amounts of volume [100,000 sensors x 1 per 15 minutes x 4 hours = 9,600,000 rows per day, x 5 years = 17,529,600,000 or so rows in five years]. To my mind, if you want to write flexible queries against that kind of data, you'll want some form of star schema structure (as gets used in data warehouses).
Whether you load the data directly into the warehouse, or let it build up "row by row" to be added to the warehouse ever day/week/month/whatever, depends on time, effort, available resources, and so on.
A final suggestion: when you set up a test environment for your new code, load it with several years of (dummy) data, to see how it will perform.

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