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This is a very difficult problem about how to maneuver a spaceship that can both translate and rotate in 3D, for a space game.
The spaceship has n jets placing in various positions and directions.
Transformation of i-th jet relative to the CM of spaceship is constant = Ti.
Transformation is a tuple of position and orientation (quaternion or matrix 3x3 or, less preferable, Euler angles).
A transformation can also be denoted by a single matrix 4x4.
In other words, all jet are glued to the ship and cannot rotate.
A jet can exert force to the spaceship only in direction of its axis (green).
As a result of glue, the axis rotated along with the spaceship.
All jets can exert force (vector,Fi) at a certain magnitude (scalar,fi) :
i-th jet can exert force (Fi= axis x fi) only within range min_i<= fi <=max_i.
Both min_i and max_i are constant with known value.
To be clear, unit of min_i,fi,max_i is Newton.
Ex. If the range doesn't cover 0, it means that the jet can't be turned off.
The spaceship's mass = m and inertia tensor = I.
The spaceship's current transformation = Tran0, velocity = V0, angularVelocity = W0.
The spaceship physic body follows well-known physic rules :-
Torque=r x F
F=ma
angularAcceleration = I^-1 x Torque
linearAcceleration = m^-1 x F
I is different for each direction, but for the sake of simplicity, it has the same value for every direction (sphere-like). Thus, I can be thought as a scalar instead of matrix 3x3.
Question
How to control all jets (all fi) to land the ship with position=0 and angle=0?
Math-like specification: Find function of fi(time) that take minimum time to reach position=(0,0,0), orient=identity with final angularVelocity and velocity = zero.
More specifically, what are names of technique or related algorithms to solve this problem?
My research (1 dimension)
If the universe is 1D (thus, no rotation), the problem will be easy to solve.
( Thank Gavin Lock, https://stackoverflow.com/a/40359322/3577745 )
First, find the value MIN_BURN=sum{min_i}/m and MAX_BURN=sum{max_i}/m.
Second, think in opposite way, assume that x=0 (position) and v=0 at t=0,
then create two parabolas with x''=MIN_BURN and x''=MAX_BURN.
(The 2nd derivative is assumed to be constant for a period of time, so it is parabola.)
The only remaining work is to join two parabolas together.
The red dash line is where them join.
In the period of time that x''=MAX_BURN, all fi=max_i.
In the period of time that x''=MIN_BURN, all fi=min_i.
It works really well for 1D, but in 3D, the problem is far more harder.
Note:
Just a rough guide pointing me to a correct direction is really appreciated.
I don't need a perfect AI, e.g. it can take a little more time than optimum.
I think about it for more than 1 week, still find no clue.
Other attempts / opinions
I don't think machine learning like neural network is appropriate for this case.
Boundary-constrained-least-square-optimisation may be useful but I don't know how to fit my two hyper-parabola to that form of problem.
This may be solved by using many iterations, but how?
I have searched NASA's website, but not find anything useful.
The feature may exist in "Space Engineer" game.
Commented by Logman: Knowledge in mechanical engineering may help.
Commented by AndyG: It is a motion planning problem with nonholonomic constraints. It could be solved by Rapidly exploring random tree (RRTs), theory around Lyapunov equation, and Linear quadratic regulator.
Commented by John Coleman: This seems more like optimal control than AI.
Edit: "Near-0 assumption" (optional)
In most case, AI (to be designed) run continuously (i.e. called every time-step).
Thus, with the AI's tuning, Tran0 is usually near-identity, V0 and W0 are usually not so different from 0, e.g. |Seta0|<30 degree,|W0|<5 degree per time-step .
I think that AI based on this assumption would work OK in most case. Although not perfect, it can be considered as a correct solution (I started to think that without this assumption, this question might be too hard).
I faintly feel that this assumption may enable some tricks that use some "linear"-approximation.
The 2nd Alternative Question - "Tune 12 Variables" (easier)
The above question might also be viewed as followed :-
I want to tune all six values and six values' (1st-derivative) to be 0, using lowest amount of time-steps.
Here is a table show a possible situation that AI can face:-
The Multiplier table stores inertia^-1 * r and mass^-1 from the original question.
The Multiplier and Range are constant.
Each timestep, the AI will be asked to pick a tuple of values fi that must be in the range [min_i,max_i] for every i+1-th jet.
Ex. From the table, AI can pick (f0=1,f1=0.1,f2=-1).
Then, the caller will use fi to multiply with the Multiplier table to get values''.
Px'' = f0*0.2+f1*0.0+f2*0.7
Py'' = f0*0.3-f1*0.9-f2*0.6
Pz'' = ....................
SetaX''= ....................
SetaY''= ....................
SetaZ''= f0*0.0+f1*0.0+f2*5.0
After that, the caller will update all values' with formula values' += values''.
Px' += Px''
.................
SetaZ' += SetaZ''
Finally, the caller will update all values with formula values += values'.
Px += Px'
.................
SetaZ += SetaZ'
AI will be asked only once for each time-step.
The objective of AI is to return tuples of fi (can be different for different time-step), to make Px,Py,Pz,SetaX,SetaY,SetaZ,Px',Py',Pz',SetaX',SetaY',SetaZ' = 0 (or very near),
by using least amount of time-steps as possible.
I hope providing another view of the problem will make it easier.
It is not the exact same problem, but I feel that a solution that can solve this version can bring me very close to the answer of the original question.
An answer for this alternate question can be very useful.
The 3rd Alternative Question - "Tune 6 Variables" (easiest)
This is a lossy simplified version of the previous alternative.
The only difference is that the world is now 2D, Fi is also 2D (x,y).
Thus I have to tune only Px,Py,SetaZ,Px',Py',SetaZ'=0, by using least amount of time-steps as possible.
An answer to this easiest alternative question can be considered useful.
I'll try to keep this short and sweet.
One approach that is often used to solve these problems in simulation is a Rapidly-Exploring Random Tree. To give at least a little credibility to my post, I'll admit I studied these, and motion planning was my research lab's area of expertise (probabilistic motion planning).
The canonical paper to read on these is Steven LaValle's Rapidly-exploring random trees: A new tool for path planning, and there have been a million papers published since that all improve on it in some way.
First I'll cover the most basic description of an RRT, and then I'll describe how it changes when you have dynamical constraints. I'll leave fiddling with it afterwards up to you:
Terminology
"Spaces"
The state of your spaceship can be described by its 3-dimension position (x, y, z) and its 3-dimensional rotation (alpha, beta, gamma) (I use those greek names because those are the Euler angles).
state space is all possible positions and rotations your spaceship can inhabit. Of course this is infinite.
collision space are all of the "invalid" states. i.e. realistically impossible positions. These are states where your spaceship is in collision with some obstacle (With other bodies this would also include collision with itself, for example planning for a length of chain). Abbreviated as C-Space.
free space is anything that is not collision space.
General Approach (no dynamics constraints)
For a body without dynamical constraints the approach is fairly straightforward:
Sample a state
Find nearest neighbors to that state
Attempt to plan a route between the neighbors and the state
I'll briefly discuss each step
Sampling a state
Sampling a state in the most basic case means choosing at random values for each entry in your state space. If we did this with your space ship, we'd randomly sample for x, y, z, alpha, beta, gamma across all of their possible values (uniform random sampling).
Of course way more of your space is obstacle space than free space typically (because you usually confine your object in question to some "environment" you want to move about inside of). So what is very common to do is to take the bounding cube of your environment and sample positions within it (x, y, z), and now we have a lot higher chance to sample in the free space.
In an RRT, you'll sample randomly most of the time. But with some probability you will actually choose your next sample to be your goal state (play with it, start with 0.05). This is because you need to periodically test to see if a path from start to goal is available.
Finding nearest neighbors to a sampled state
You chose some fixed integer > 0. Let's call that integer k. Your k nearest neighbors are nearby in state space. That means you have some distance metric that can tell you how far away states are from each other. The most basic distance metric is Euclidean distance, which only accounts for physical distance and doesn't care about rotational angles (because in the simplest case you can rotate 360 degrees in a single timestep).
Initially you'll only have your starting position, so it will be the only candidate in the nearest neighbor list.
Planning a route between states
This is called local planning. In a real-world scenario you know where you're going, and along the way you need to dodge other people and moving objects. We won't worry about those things here. In our planning world we assume the universe is static but for us.
What's most common is to assume some linear interpolation between the sampled state and its nearest neighbor. The neighbor (i.e. a node already in the tree) is moved along this linear interpolation bit by bit until it either reaches the sampled configuration, or it travels some maximum distance (recall your distance metric).
What's going on here is that your tree is growing towards the sample. When I say that you step "bit by bit" I mean you define some "delta" (a really small value) and move along the linear interpolation that much each timestep. At each point you check to see if you the new state is in collision with some obstacle. If you hit an obstacle, you keep the last valid configuration as part of the tree (don't forget to store the edge somehow!) So what you'll need for a local planner is:
Collision checking
how to "interpolate" between two states (for your problem you don't need to worry about this because we'll do something different).
A physics simulation for timestepping (Euler integration is quite common, but less stable than something like Runge-Kutta. Fortunately you already have a physics model!
Modification for dynamical constraints
Of course if we assume you can linearly interpolate between states, we'll violate the physics you've defined for your spaceship. So we modify the RRT as follows:
Instead of sampling random states, we sample random controls and apply said controls for a fixed time period (or until collision).
Before, when we sampled random states, what we were really doing was choosing a direction (in state space) to move. Now that we have constraints, we randomly sample our controls, which is effectively the same thing, except we're guaranteed not to violate our constraints.
After you apply your control for a fixed time interval (or until collision), you add a node to the tree, with the control stored on the edge. Your tree will grow very fast to explore the space. This control application replaces linear interpolation between tree states and sampled states.
Sampling the controls
You have n jets that individually have some min and max force they can apply. Sample within that min and max force for each jet.
Which node(s) do I apply my controls to?
Well you can choose at random, or your can bias the selection to choose nodes that are nearest to your goal state (need the distance metric). This biasing will try to grow nodes closer to the goal over time.
Now, with this approach, you're unlikely to exactly reach your goal, so you need to define some definition of "close enough". That is, you will use your distance metric to find nearest neighbors to your goal state, and then test them for "close enough". This "close enough" metric can be different than your distance metric, or not. If you're using Euclidean distance, but it's very important that you goal configuration is also rotated properly, then you may want to modify the "close enough" metric to look at angle differences.
What is "close enough" is entirely up to you. Also something for you to tune, and there are a million papers that try to get you a lot closer in the first place.
Conclusion
This random sampling may sound ridiculous, but your tree will grow to explore your free space very quickly. See some youtube videos on RRT for path planning. We can't guarantee something called "probabilistic completeness" with dynamical constraints, but it's usually "good enough". Sometimes it'll be possible that a solution does not exist, so you'll need to put some logic in there to stop growing the tree after a while (20,000 samples for example)
More Resources:
Start with these, and then start looking into their citations, and then start looking into who is citing them.
Kinodynamic RRT*
RRT-Connect
This is not an answer, but it's too long to place as a comment.
First of all, a real solution will involve both linear programming (for multivariate optimization with constraints that will be used in many of the substeps) as well as techniques used in trajectory optimization and/or control theory. This is a very complex problem and if you can solve it, you could have a job at any company of your choosing. The only thing that could make this problem worse would be friction (drag) effects or external body gravitation effects. A real solution would also ideally use Verlet integration or 4th order Runge Kutta, which offer improvements over the Euler integration you've implemented here.
Secondly, I believe your "2nd Alternative Version" of your question above has omitted the rotational influence on the positional displacement vector you add into the position at each timestep. While the jet axes all remain fixed relative to the frame of reference of the ship, they do not remain fixed relative to the global coordinate system you are using to land the ship (at global coordinate [0, 0, 0]). Therefore the [Px', Py', Pz'] vector (calculated from the ship's frame of reference) must undergo appropriate rotation in all 3 dimensions prior to being applied to the global position coordinates.
Thirdly, there are some implicit assumptions you failed to specify. For example, one dimension should be defined as the "landing depth" dimension and negative coordinate values should be prohibited (unless you accept a fiery crash). I developed a mockup model for this in which I assumed z dimension to be the landing dimension. This problem is very sensitive to initial state and the constraints placed on the jets. All of my attempts using your example initial conditions above failed to land. For example, in my mockup (without the 3d displacement vector rotation noted above), the jet constraints only allow for rotation in one direction on the z-axis. So if aZ becomes negative at any time (which is often the case) the ship is actually forced to complete another full rotation on that axis before it can even try to approach zero degrees again. Also, without the 3d displacement vector rotation, you will find that Px will only go negative using your example initial conditions and constraints, and the ship is forced to either crash or diverge farther and farther onto the negative x-axis as it attempts to maneuver. The only way to solve this is to truly incorporate rotation or allow for sufficient positive and negative jet forces.
However, even when I relaxed your min/max force constraints, I was unable to get my mockup to land successfully, demonstrating how complex planning will probably be required here. Unless it is possible to completely formulate this problem in linear programming space, I believe you will need to incorporate advanced planning or stochastic decision trees that are "smart" enough to continually use rotational methods to reorient the most flexible jets onto the currently most necessary axes.
Lastly, as I noted in the comments section, "On May 14, 2015, the source code for Space Engineers was made freely available on GitHub to the public." If you believe that game already contains this logic, that should be your starting place. However, I suspect you are bound to be disappointed. Most space game landing sequences simply take control of the ship and do not simulate "real" force vectors. Once you take control of a 3-d model, it is very easy to predetermine a 3d spline with rotation that will allow the ship to land softly and with perfect bearing at the predetermined time. Why would any game programmer go through this level of work for a landing sequence? This sort of logic could control ICBM missiles or planetary rover re-entry vehicles and it is simply overkill IMHO for a game (unless the very purpose of the game is to see if you can land a damaged spaceship with arbitrary jets and constraints without crashing).
I can introduce another technique into the mix of (awesome) answers proposed.
It lies more in AI, and provides close-to-optimal solutions. It's called Machine Learning, more specifically Q-Learning. It's surprisingly easy to implement but hard to get right.
The advantage is that the learning can be done offline, so the algorithm can then be super fast when used.
You could do the learning when the ship is built or when something happens to it (thruster destruction, large chunks torn away...).
Optimality
I observed you're looking for near-optimal solutions. Your method with parabolas is good for optimal control. What you did is this:
Observe the state of the system.
For every state (coming in too fast, too slow, heading away, closing in etc.) you devised an action (apply a strategy) that will bring the system into a state closer to the goal.
Repeat
This is pretty much intractable for a human in 3D (too many cases, will drive you nuts) however a machine may learn where to split the parabolas in every dimensions, and devise an optimal strategy by itself.
THe Q-learning works very similarly to us:
Observe the (secretized) state of the system
Select an action based on a strategy
If this action brought the system into a desirable state (closer to the goal), mark the action/initial state as more desirable
Repeat
Discretize your system's state.
For each state, have a map intialized quasi-randomly, which maps every state to an Action (this is the strategy). Also assign a desirability to each state (initially, zero everywhere and 1000000 to the target state (X=0, V=0).
Your state would be your 3 positions, 3 angles, 3translation speed, and three rotation speed.
Your actions can be any combination of thrusters
Training
Train the AI (offline phase):
Generate many diverse situations
Apply the strategy
Evaluate the new state
Let the algo (see links above) reinforce the selected strategies' desirability value.
Live usage in the game
After some time, a global strategy for navigation emerges. You then store it, and during your game loop you simply sample your strategy and apply it to each situation as they come up.
The strategy may still learn during this phase, but probably more slowly (because it happens real-time). (Btw, I dream of a game where the AI would learn from every user's feedback so we could collectively train it ^^)
Try this in a simple 1D problem, it devises a strategy remarkably quickly (a few seconds).
In 2D I believe excellent results could be obtained in an hour.
For 3D... You're looking at overnight computations. There's a few thing to try and accelerate the process:
Try to never 'forget' previous computations, and feed them as an initial 'best guess' strategy. Save it to a file!
You might drop some states (like ship roll maybe?) without losing much navigation optimality but increasing computation speed greatly. Maybe change referentials so the ship is always on the X-axis, this way you'll drop x&y dimensions!
States more frequently encountered will have a reliable and very optimal strategy. Maybe normalize the state to make your ship state always close to a 'standard' state?
Typically rotation speeds intervals may be bounded safely (you don't want a ship tumbling wildely, so the strategy will always be to "un-wind" that speed). Of course rotation angles are additionally bounded.
You can also probably discretize non-linearly the positions because farther away from the objective, precision won't affect the strategy much.
For these kind of problems there are two techniques available: bruteforce search and heuristics. Bruteforce means to recognize the problem as a blackbox with input and output parameters and the aim is to get the right input parameters for winning the game. To program such a bruteforce search, the gamephysics runs in a simulation loop (physics simulation) and via stochastic search (minimax, alpha-beta-prunning) every possibility is tried out. The disadvantage of bruteforce search is the high cpu consumption.
The other techniques utilizes knowledge about the game. Knowledge about motion primitives and about evaluation. This knowledge is programmed with normal computerlanguages like C++ or Java. The disadvantage of this idea is, that it is often difficult to grasp the knowledge.
The best practice for solving spaceship navigation is to combine both ideas into a hybrid system. For programming sourcecode for this concrete problem I estimate that nearly 2000 lines of code are necessary. These kind of problems are normaly done within huge projects with many programmers and takes about 6 months.
Firstly, sorry for the vague title and if this question has been asked before, but I was not entirely sure how to phrase it.
I am looking for general design principles for finding pairs of 'similar' objects from two different data sources.
Lets for simplicity say that we have two databases, A and B, both containing large volumes of objects, each with time-stamp and geo-location, along with some other data that we don't care about here.
Now I want to perform a search along these lines:
Within as certain time-frame and location dictated as search tiem, find pairs of objects from A and B respectively, ordered by some similarity score. Here for example some scalar 'time/space distance' function, distance(a,b), that calculates the distance in time and space between the objects.
I am expecting to get a (potentially ginormous) set of results where the first result is a pair of data points which has the minimum 'distance'.
I realize that the full search space is cardinality(A) x cardinality(B).
Are there any general guidelines on how to do this in a reasonable efficient way? I assume that I would need to replicate the two databases into a common repository like Hadoop? But then what? I am not sure how to perform such a query in Hadoop either.
What is this this type of query called?
To me, this is some kind of "fuzzy inner join" that I struggle wrapping my head around how to construct, let along efficiently at scale.
SQL joins don't have to be based on equality. You can use ">", "<", "BETWEEN".
You can even do something like this:
select a.val aval, b.val bval, a.val - b.val diff
from A join B on abs(a.val - b.val) < 100
What you need is a way to divide your objects into buckets in advance, without comparing them (or at least making a linear, rather than square, number of comparisons). That way, at query time, you will only be comparing a small number of items.
There is no "one-size-fits-all" way to bucket your items. In your case the bucketing can be based on time, geolocation, or both. Time-based bucketing is very natural, and can also scales elastically (increase or decrease the bucket size). Geo-clustering buckets can be based on distance from a particular point in space (if the space is abstract), or on some finite division of the space (for example, if you divide the entire Earth's world map into tiles, which can also scale nicely if done right).
A good question to ask is "if my data starts growing rapidly, can I handle it by just adding servers?" If not, you might need to rethink the design.
I need a way of storing sets of arbitrary size for fast query later on.
I'll be needing to query the resulting data structure for subsets or sets that are already stored.
===
Later edit: To clarify, an accepted answer to this question would be a link to a study that proposes a solution to this problem. I'm not expecting for people to develop the algorithm themselves.
I've been looking over the tuple clustering algorithm found here, but it's not exactly what I want since from what I understand it 'clusters' the tuples into more simple, discrete/aproximate forms and loses the original tuples.
Now, an even simpler example:
[alpha, beta, gamma, delta] [alpha, epsilon, delta] [gamma, niu, omega] [omega, beta]
Query:
[alpha, delta]
Result:
[alpha, beta, gama, delta] [alpha, epsilon, delta]
So the set elements are just that, unique, unrelated elements. Forget about types and values. The elements can be tested among them for equality and that's it. I'm looking for an established algorithm (which probably has a name and a scientific paper on it) more than just creating one now, on the spot.
==
Original examples:
For example, say the database contains these sets
[A1, B1, C1, D1], [A2, B2, C1], [A3, D3], [A1, D3, C1]
If I use [A1, C1] as a query, these two sets should be returned as a result:
[A1, B1, C1, D1], [A1, D3, C1]
Example 2:
Database:
[Gasoline amount: 5L, Distance to Berlin: 240km, car paint: red]
[Distance to Berlin: 240km, car paint: blue, number of car seats: 2]
[number of car seats: 2, Gasoline amount: 2L]
Query:
[Distance to berlin: 240km]
Result
[Gasoline amount: 5L, Distance to Berlin: 240km, car paint: red]
[Distance to Berlin: 240km, car paint: blue, number of car seats: 2]
There can be an unlimited number of 'fields' such as Gasoline amount. A solution would probably involve the database grouping and linking sets having common states (such as Gasoline amount: 240) in such a way that the query is as efficient as possible.
What algorithms are there for such needs?
I am hoping there is already an established solution to this problem instead of just trying to find my own on the spot, which might not be as efficient as one tested and improved upon by other people over time.
Clarifications:
If it helps answer the question, I'm intending on using them for storing states:
Simple example:
[Has milk, Doesn't have eggs, Has Sugar]
I'm thinking such a requirement might require graphs or multidimensional arrays, but I'm not sure
Conclusion
I've implemented the two algorithms proposed in the answers, that is Set-Trie and Inverted Index and did some rudimentary profiling on them. Illustrated below is the duration of a query for a given set for each algorithm. Both algorithms worked on the same randomly generated data set consisting of sets of integers. The algorithms seem equivalent (or almost) performance wise:
I'm confident that I can now contribute to the solution. One possible quite efficient way is a:
Trie invented by Frankling Mark Liang
Such a special tree is used for example in spell checking or autocompletion and that actually comes close to your desired behavior, especially allowing to search for subsets quite conveniently.
The difference in your case is that you're not interested in the order of your attributes/features. For your case a Set-Trie was invented by Iztok Savnik.
What is a Set-Tree? A tree where each node except the root contains a single attribute value (number) and a marker (bool) if at this node there is a data entry. Each subtree contains only attributes whose values are larger than the attribute value of the parent node. The root of the Set-Tree is empty. The search key is the path from the root to a certain node of the tree. The search result is the set of paths from the root to all nodes containing a marker that you reach when you go down the tree and up the search key simultaneously (see below).
But first a drawing by me:
The attributes are {1,2,3,4,5} which can be anything really but we just enumerate them and therefore naturally obtain an order. The data is {{1,2,4}, {1,3}, {1,4}, {2,3,5}, {2,4}} which in the picture is the set of paths from the root to any circle. The circles are the markers for the data in the picture.
Please note that the right subtree from root does not contain attribute 1 at all. That's the clue.
Searching including subsets Say you want to search for attributes 4 and 1. First you order them, the search key is {1,4}. Now startin from root you go simultaneously up the search key and down the tree. This means you take the first attribute in the key (1) and go through all child nodes whose attribute is smaller or equal to 1. There is only one, namely 1. Inside you take the next attribute in the key (4) and visit all child nodes whose attribute value is smaller than 4, that are all. You continue until there is nothing left to do and collect all circles (data entries) that have the attribute value exactly 4 (or the last attribute in the key). These are {1,2,4} and {1,4} but not {1,3} (no 4) or {2,4} (no 1).
Insertion Is very easy. Go down the tree and store a data entry at the appropriate position. For example data entry {2.5} would be stored as child of {2}.
Add attributes dynamically Is naturally ready, you could immediately insert {1,4,6}. It would come below {1,4} of course.
I hope you understand what I want to say about Set-Tries. In the paper by Iztok Savnik it's explained in much more detail. They probably are very efficient.
I don't know if you still want to store the data in a database. I think this would complicate things further and I don't know what is the best to do then.
How about having an inverse index built of hashes?
Suppose you have your values int A, char B, bool C of different types. With std::hash (or any other hash function) you can create numeric hash values size_t Ah, Bh, Ch.
Then you define a map that maps an index to a vector of pointers to the tuples
std::map<size_t,std::vector<TupleStruct*> > mymap;
or, if you can use global indices, just
std::map<size_t,std::vector<size_t> > mymap;
For retrieval by queries X and Y, you need to
get hash value of the queries Xh and Yh
get the corresponding "sets" out of mymap
intersect the sets mymap[Xh] and mymap[Yh]
If I understand your needs correctly, you need a multi-state storing data structure, with retrievals on combinations of these states.
If the states are binary (as in your examples: Has milk/doesn't have milk, has sugar/doesn't have sugar) or could be converted to binary(by possibly adding more states) then you have a lightning speed algorithm for your purpose: Bitmap Indices
Bitmap indices can do such comparisons in memory and there literally is nothing in comparison on speed with these (ANDing bits is what computers can really do the fastest).
http://en.wikipedia.org/wiki/Bitmap_index
Here's the link to the original work on this simple but amazing data structure: http://www.sciencedirect.com/science/article/pii/0306457385901086
Almost all SQL databases supoort Bitmap Indexing and there are several possible optimizations for it as well(by compression etc.):
MS SQL: http://technet.microsoft.com/en-us/library/bb522541(v=sql.105).aspx
Oracle: http://www.orafaq.com/wiki/Bitmap_index
Edit:
Apparently the original research work on bitmap indices is no longer available for free public access.
Links to recent literature on this subject:
Bitmap Index Design Choices and Their Performance
Implications
Bitmap Index Design and Evaluation
Compressing Bitmap Indexes for Faster Search Operations
This problem is known in the literature as subset query. It is equivalent to the "partial match" problem (e.g.: find all words in a dictionary matching A??PL? where ? is a "don't care" character).
One of the earliest results in this area is from this paper by Ron Rivest from 19761. This2 is a more recent paper from 2002. Hopefully, this will be enough of a starting point to do a more in-depth literature search.
Rivest, Ronald L. "Partial-match retrieval algorithms." SIAM Journal on Computing 5.1 (1976): 19-50.
Charikar, Moses, Piotr Indyk, and Rina Panigrahy. "New algorithms for subset query, partial match, orthogonal range searching, and related problems." Automata, Languages and Programming. Springer Berlin Heidelberg, 2002. 451-462.
This seems like a custom made problem for a graph database. You make a node for each set or subset, and a node for each element of a set, and then you link the nodes with a relationship Contains. E.g.:
Now you put all the elements A,B,C,D,E in an index/hash table, so you can find a node in constant time in the graph. Typical performance for a query [A,B,C] will be the order of the smallest node, multiplied by the size of a typical set. E.g. to find {A,B,C] I find the order of A is one, so I look at all the sets A is in, S1, and then I check that it has all of BC, since the order of S1 is 4, I have to do a total of 4 comparisons.
A prebuilt graph database like Neo4j comes with a query language, and will give good performance. I would imagine, provided that the typical orders of your database is not large, that its performance is far superior to the algorithms based on set representations.
Hashing is usually an efficient technique for storage and retrieval of multidimensional data. Problem is here that the number of attributes is variable and potentially very large, right? I googled it a bit and found Feature Hashing on Wikipedia. The idea is basically the following:
Construct a hash of fixed length from each data entry (aka feature vector)
The length of the hash must be much smaller than the number of available features. The length is important for the performance.
On the wikipedia page there is an implementation in pseudocode (create hash for each feature contained in entry, then increase feature-vector-hash at this index position (modulo length) by one) and links to other implementations.
Also here on SO is a question about feature hashing and amongst others a reference to a scientific paper about Feature Hashing for Large Scale Multitask Learning.
I cannot give a complete solution but you didn't want one. I'm quite convinced this is a good approach. You'll have to play around with the length of the hash as well as with different hashing functions (bloom filter being another keyword) to optimize the speed for your special case. Also there might still be even more efficient approaches if for example retrieval speed is more important than storage (balanced trees maybe?).
I have some data, up to a between a million and a billion records, each which is represented by a bitfield, about 64 bits per key. The bits are independent, you can imagine them basically as random bits.
If I have a test key and I want to find all values in my data with the same key, a hash table will spit those out very easily, in O(1).
What algorithm/data structure would efficiently find all records most similar to the query key? Here similar means that most bits are identical, but a minimal number are allowed to be wrong. This is traditionally measured by Hamming distance., which just counts the number of mismatched bits.
There's two ways this query might be made, one might be by specifying a mismatch rate like "give me a list of all existing keys which have less than 6 bits that differ from my query" or by simply best matches, like "give me a list of the 10,000 keys which have the lowest number of differing bits from my query."
You might be temped to run to k-nearest-neighbor algorithms, but here we're talking about independent bits, so it doesn't seem likely that structures like quadtrees are useful.
The problem can be solved by simple brute force testing a hash table for low numbers of differing bits. If we want to find all keys that differ by one bit from our query, for example, we can enumerate all 64 possible keys and test them all. But this explodes quickly, if we wanted to allow two bits of difference, then we'd have to probe 64*63=4032 times. It gets exponentially worse for higher numbers of bits.
So is there another data structure or strategy that makes this kind of query more efficient?
The database/structure can be preprocessed as much as you like, it's the query speed that should be optimized.
What you want is a BK-Tree. It's a tree that's ideally suited to indexing metric spaces (your problem is one), and supports both nearest-neighbour and distance queries. I wrote an article about it a while ago.
BK-Trees are generally described with reference to text and using levenshtein distance to build the tree, but it's straightforward to write one in terms of binary strings and hamming distance.
This sounds like a good fit for an S-Tree, which is like a hierarchical inverted file. Good resources on this topic include the following papers:
Hierarchical Bitmap Index: An Efficient and Scalable Indexing Technique for Set-Valued Attributes.
Improved Methods for Signature-Tree Construction (2000)
Quote from the first one:
The hierarchical bitmap index efficiently supports dif-
ferent classes of queries, including subset, superset and similarity queries.
Our experiments show that the hierarchical bitmap index outperforms
other set indexing techniques significantly.
These papers include references to other research that you might find useful, such as M-Trees.
Create a binary tree (specifically a trie) representing each key in your start set in the following way: The root node is the empty word, moving down the tree to the left appends a 0 and moving down the right appends a 1. The tree will only have as many leaves as your start set has elements, so the size should stay manageable.
Now you can do a recursive traversal of this tree, allowing at most n "deviations" from the query key in each recursive line of execution, until you have found all of the nodes in the start set which are within that number of deviations.
I'd go with an inverted index, like a search engine. You've basically got a fixed vocabulary of 64 words. Then similarity is measured by hamming distance, instead of cosine similarity like a search engine would want to use. Constructing the index will be slow, but you ought to be able to query it with normal search enginey speeds.
The book Introduction to Information Retrieval covers the efficient construction, storage, compression and querying of inverted indexes.
"Near-optimal hashing algorithms for approximate nearest neighbor in high dimensions", from 2008, seems to be the best result as of then. I won't try to summarize since I read it over a year ago and it's hairy. That's from a page on locality-sensitive hashing, along with an implementation of an earlier version of the scheme. For more general pointers, read up on nearest neighbor search.
This kind of question has been asked before: Fastest way to find most similar string to an input?
The database/structure can be
preprocessed as much as you like
Well...IF that is true. Then all you need is a similarity matrix of your hamming distances. Make the matrix sparse by pruning out large distances. It doesn't get any faster and not that much of a memory hog.
Well, you could insert all of the neighbor keys along with the original key. That would mean that you store (64 choose k) times as much data, for k differing bits, and it will require that you decide k beforehand. Though you could always extend k by brute force querying neighbors, and this will automatically query the neighbors of your neighbors that you inserted. This also gives you a time-space tradeoff: for example, if you accept a 64 x data blowup and 64 times slower you can get two bits of distance.
I haven't completely thought this through, but I have an idea of where I'd start.
You could divide the search space up into a number of buckets where each bucket has a bucket key and the keys in the bucket are the keys that are more similar to this bucket key than any other bucket key. To create the bucket keys, you could randomly generate 64 bit keys and discard any that are too close to any previously created bucket key, or you could work out some algorithm that generates keys that are all dissimilar enough. To find the closest key to a test key, first find the bucket key that is closest, and then test each key in the bucket. (Actually, it's possible, but not likely, for the closest key to be in another bucket - do you need to find the closest key, or would a very close key be good enough?)
If you're ok with doing it probabilistically, I think there's a good way to solve question 2. I assume you have 2^30 data and cutoff and you want to find all points within cutoff distance from test.
One_Try()
1. Generate randomly a 20-bit subset S of 64 bits
2. Ask for a list of elements that agree with test on S (about 2^10 elements)
3. Sort that list by Hamming distance from test
4. Discard the part of list after cutoff
You repeat One_Try as much as you need while merging the lists. The more tries you have, the more points you find. For example, if x is within 5 bits, you'll find it in one try with about (2/3)^5 = 13% probability. Therefore if you repeat 100 tries you find all but roughly 10^{-6} of such x. Total time: 100*(1000*log 1000).
The main advantage of this is that you're able to output answers to question 2 as you proceed, since after the first few tries you'll certainly find everything within distance not more than 3 bits, etc.
If you have many computers, you give each of them several tries, since they are perfectly parallelizable: each computer saves some hash tables in advance.
Data structures for large sets described here: Detecting Near-Duplicates for Web Crawling
or
in memory trie: Judy-arrays at sourceforge.net
Assuming you have to visit each row to test its value (or if you index on the bitfield then each index entry), then you can write the actual test quite efficiently using
A xor B
To find the difference bits, then bit-count the result, using a technique like this.
This effectively gives you the hamming distance.
Since this can compile down to tens of instructions per test, this can run pretty fast.
If you are okay with a randomized algorithm (monte carlo in this case), you can use the minhash.
If the data weren't so sparse, a graph with keys as the vertices and edges linking 'adjacent' (Hamming distance = 1) nodes would probably be very efficient time-wise. The space would be very large though, so in your case, I don't think it would be a worthwhile tradeoff.
I have a number of tracks recorded by a GPS, which more formally can be described as a number of line strings.
Now, some of the recorded tracks might be recordings of the same route, but because of inaccurasies in the GPS system, the fact that the recordings were made on separate occasions and that they might have been recorded travelling at different speeds, they won't match up perfectly, but still look close enough when viewed on a map by a human to determine that it's actually the same route that has been recorded.
I want to find an algorithm that calculates the similarity between two line strings. I have come up with some home grown methods to do this, but would like to know if this is a problem that's already has good algorithms to solve it.
How would you calculate the similarity, given that similar means represents the same path on a map?
Edit: For those unsure of what I'm talking about, please look at this link for a definition of what a line string is: http://msdn.microsoft.com/en-us/library/bb895372.aspx - I'm not asking about character strings.
Compute the Fréchet distance on each pair of tracks. The distance can be used to gauge the similarity of your tracks.
Math alert: Fréchet was a pioneer in the field of metric space which is relevant to your problem.
I would add a buffer around the first line based on the estimated probable error, and then determine if the second line fits entirely within the buffer.
To determine "same route," create the minimal set of normalized path vectors, calculate the total power differences and compare the total to a quality measure.
Normalize the GPS waypoints on total path length,
walk the vectors of the paths together, creating a new set of path vectors for each path based upon the shortest vector at each waypoint,
calculate the total power differences between endpoints of each vector in the normalized paths weighting for vector length, and
compare against a quality measure.
Tune the power of the differences (start with, say, squared differences) and the quality measure (say as a percent of the total power differences) visually. This algorithm produces a continuous quality measure of the path match as well as a binary result (Are the paths the same?)
Paul Tomblin said: I would add a buffer
around the first line based on the
estimated probable error, and then
determine if the second line fits
entirely within the buffer.
You could modify the algorithm as the normalized vector endpoints are compared. You could determine if any endpoint difference was above a certain size (implementing Paul's buffer idea) or perhaps, if the endpoints were outside the "buffer," use that fact to ignore that endpoint difference, allowing a comparison ignoring side trips.
You could walk along each point (Pa) of LineString A and measure the distance from Pa to the nearest line-segment of LineString B, averaging each of these distances.
This is not a quick or perfect method, but should be able to give use a useful number and is pretty quick to implement.
Do the line strings start and finish at similar points, or are they of very different extents?
If you consider a single line string to be a sequence of [x,y] points (or [x,y,z] points), then you could compute the similarity between each pair of line strings using the Needleman-Wunsch algorithm. As described in the referenced Wikipedia article, the Needleman-Wunsch algorithm requires a "similarity matrix" which defines the distance between a pair of points. However, it would be easy to use a function instead of a matrix. In your case you could simply use the 2D Euclidean distance function (or a 3D Euclidean function if your points have elevation) to provide the distance between each pair of points.
I actually side with the person (Aaron F) who said that you might be interested in the Levenshtein distance problem (and cited this). His answer seems to me to be the best so far.
More specifically, Levenshtein distance (also called edit distance), does not measure strictly the character-by-character distance, but also allows you to perform insertions and deletions. The best algorithm for this distance measure can be computed in quadratic time (pretty slow if your strings are long), but the computational biologists have pretty good heuristics for this, that might be of interest to you on their own. Check out BLAST and FASTA.
In your problem, it seems that you are dealing with differences between strings of numbers, and you care about the numbers. If you give more information, I might be able to direct you to the right variant of BLAST/FASTA/etc for your purposes. In any case, you might consider adapting BLAST and FASTA for your needs. They're quite simple.
1: http://en.wikipedia.org/wiki/Levenshtein_distance, http://www.nist.gov/dads/HTML/Levenshtein.html