Backend for Web Development using Clojure/ClojureScript - database

I'm familiar with developing desktop apps in Clojure (written a multithreaded interactive visualization system). However, I'm fairly new to Web development using Clojure.
I plan to use Clojure on the server for handling logic; and ClojureScript for handing client side work. However, I don't know what to use for my database server. Should I use something like Monogodb? or Hadoop? Or .... ?
The app is something very simple; a basic forum. Total number of concurrent users will be < 100 at a given time. One thing that is important to me is the ability to easily backup / data consistency -- it's very very important to me that I can easily make daily backups (and not lose all the data.)
Thanks!

You can use many databases; if the database has an API for Java, you should be good to go. MySQL, MongoDB, Postgres, Hadoop… and more.
For a nice overview of the webstack in Clojure, check out brehaut's article on the matter.
For getting up and running quickly with Clojure and ClojureScript, try ClojureScriptOne.
There are many ways to write what you want to write; if you're already familiar with Clojure, it shouldn't be too hard to get going.

Haven't used it myself, but Datomic ( http://datomic.com/ ) looks great for anyone coming from Clojure.

Datomic is an amazing database, and I'd highly recommend it. It has many features which set it apart from other database systems:
Like Clojure's data structures, it's persistent, meaning that by default, adding new facts to the database doesn't delete old facts, allowing you to query the state of the database at a previous point in time, enhancing audit-ability and assistance in debugging.
The underlying Entity Attribute Value (EAV/triple) data model (at least partly inspired by RDF & the Semantic Web), is extremely flexible, allowing you to express arbitrary graph structures and effortlessly deal with polymorphism.
The query language is flavor of Datalog, a sort of pattern matching based query language strictly more expressive than SQL and the like in that it can do recursive queries, making it particularly well suited for dealing with graph data/queries.
In addition to Datalog queries, there's a pull api, which let's you pull data out of the database more simply using a GraphQL like expression which specifies the shape of a document-like structure you'd like to pull out of the database. These queries can even be used from within the :find clause of a Datalog query.
You can use Clojure functions from within your queries.
The indexing system is very smart and more or less automatic, in stark contrast with the work that typically goes into tuning SQL databases for performance.
Transactions go through a different API/function call than queries, meaning that the number one security risk identified by OWASP (SQL injection) is literally impossible in Datomic.
The transactor/read-replica design makes it super easy to scale reads/queries, while keeping pressure off the transactor.
It's fun as hell.
One of the things worth pointing out here is that by embracing the EAV data model and datalog/pull queries, Datomic ends up having structural flexibility closer to that of a NoSQL database, while still being fundamentally relational, and even more expressive in it's relational queries than SQL.
It's amazing and you should absolutely give it a shot. It will melt your brain a little. In the good way.
It's also worth noting that it's popularity has inspired a number of successful open source projects, so the underlying approach is not going anywhere any time soon:
DataScript: In memory clj/cljs partial implementation
Datahike: Fork of DataScript which queries over on disk indices, meaning you don't have to keep everything in memory to query
Mentat: Mozilla project trying to make a Datomic-alike for a Mozilla project

Related

When should I use Datomic?

I'm intrigued in the database service Datomic, but I'm not sure if it fits the needs of the projects I work on. When is Datomic a good choice, and when should it be avoided?
With the proviso that I haven't used Datomic in production, thought I'd give you an answer.
Advantages
Datalog queries are powerful (more so than non-recursive SQL) and very expressive.
Queries can be written with Clojure data structures, and it's NOT a weak DSL like many SQL libraries that allow you to query with data structures.
It's immutable, so you get the advantages that immutability gives you in Clojure/other languages as well
a. This also allows you to store, while saving structures, all past facts in your database—this is VERY useful for auditing & more
Disadvantages
It can be slow, as Datalog is just going to be slower than equivalent SQL (assuming an equivalent SQL statement can be written).
If you are writing a LOT, you could maybe need to worry about the single transactor getting overwhelmed. This seems unlikely for most cases, but it's something to think about (you could do a sort of shard, though, and probably save yourself; but this isn't a DB for e.g. storing stock tick data).
It's a bit tricky to get up and running with, and it's expensive, and the licensing and price makes it difficult to use a hosted instance with it: you'll need to be dealing with sysadminning this yourself instead of using something like Postgres on Heroku or Mongo at MongoHQ
I'm sure I'm missing some on each side, and though I have 3 listed under disadvantages, I think that the advantages outweigh them in more circumstances where disadvantages don't preclude its use. Price is probably the one that will prevent its being used in most small projects (that you expect to outlast the 1 year free trial).
Cf. this short post describing Datomic simply for some more information.
Expressivity (c.f. Datalog) and immutability are awesome. It's SO much fun to work with Dataomic in that regard, and you can tell it's powerful just by using it a bit.
One important thing when considering if Datomic is the right fit for your application is to think about shape of the data you are going to store and query - as Datomic facts are actually very similar to RDF triples (+ first class time notion) it lends itself very good to modeling complex relationships (linked graph data) - something which is often cumbersome with traditional SQL databases.
I found this aspect to be one of the most appealing and important for me, it worked really well, even if this is of course not something exclusive to Datomic, as there are many other high-quality offerings for graph databases, one must mention Neo4J when we are talking about JVM based solutions.
Regarding Datomic schema, i think it's just the right balance between flexibility and stability.
To complete the above answers, I'd like to emphasize that immutability and the ability to remember the past are not 'wizardry features' suited to a few special case like auditing. It is an approach which has several deep benefits compared to 'mutable cells' databases (which are 99% of databases today). Stuart Halloway demonstrates this nicely in this video: the Impedance Mismatch is our fault.
In my personal opinion, this approach is fundamentally more sane conceptually. Having used it for several months, I don't see Datomic has having crazy magical sophisticated powers, rather a more natural paradigm without some of the big problems the others have.
Here are some features of Datomic I find valuable, most of which are enabled by immutability:
because reading is not remote, you don't have to design your queries like an expedition over the wire. In particular, you can separate concerns into several queries (e.g find the entities which are the input to my query - answer some business question about these entities - fetch associated data for presenting the result)
the schema is very flexible, without sacrificing query power
it's comfortable to have your queries integrated in your application programming language
the Entity API brings you the good parts of ORMs
the query language is programmable and has primitives for abstraction and reuse (rules, predicates, database functions)
performance: writers impede only other writers, and no one impedes readers. Plus, lots of caching.
... and yes, a few superpowers like travelling to the past, speculative writes or branching reality.
Regarding when not to use Datomic, here are the current constraints and limitations I see:
you have to be on the JVM (there is also a REST API, but you lose most of the benefits IMO)
not suited for write scale, nor huge data volumes
won't be especially integrated into frameworks, e.g you won't currently find a library which generates CRUD REST endpoints from a Datomic schema
it's a commercial database
since reading happens in the application process (the 'Peer'), you have to make sure that the Peer has enough memory to hold all the data it needs to traverse in a query.
So my very vague and informal answer would be that Datomic is a good fit for most non-trivial applications which write load is reasonable and you don't have a problem with the license and being on the JVM.
As an analogy, you can ask yourself the same question for Git as compared to other version control systems which are not based on immutability.
Just to tentatively add over the other answers:
It is probably fair to say datomic presents the better conceptual framework for a queryable data store of all other current options out there, while being partially scalable and not exceptionally performant.
I say only partially scalable, because queries need to fit in the peer RAM or fail. And not exceptionally performant, as top-notch SQL engines can optimize queries to fit in memory through sophisticated execution plans, something I've not yet seen mentioned as a feature in datomic; Datomic's decoupling of transacting and querying might in the overall offset this feature.
Unlike many NoSQL engines though, transactions are a first-class citizen, which puts it at par with RDBMS systems in that key regard.
For applications where data is read more than being written, transactions are needed, queries always fit in memory or memory is very cheap, and the overall size of accumulated data isn't too large, it might be a win where a commercial-only product can be afforded ― for those who are willing to embrace its novel conceptual framework implied in the API.

Ideal database for a minimalist blog engine

So I'm designing this blog engine and I'm trying to just keep my blog data without considering comments or membership system or any other type of multi-user data.
The blog itself is surrounded around 2 types of data, the first is the actual blog post entry which consists of: title, post body, meta data (mostly dates and statistics), so it's really simple and can be represented by simple json object. The second type of data is the blog admin configuration and personal information. Comment system and other will be implemented using disqus.
My main concern here is the ability of such engine to scale with spiked visits (I know you might argue this but lets take it for granted). So since I've started this project I'm moving well with the rest of my stack except the data layer. Now I've been having this dilemma choosing the database, I've considered MongoDB but some reviews and articles/benchmarking were suggesting slow reads after collections read certain size. Next I was looking at Redis and using its persistence features RDB and AOF, while Redis is good at both fast reading/writing I'm afraid of using it because I'm not familiar with it. And this whole search keeps going on to things like "PostgreSQL 9.4 is now faster than MongoDB for storing JSON documents" etc.
So is there any way I can settle this issue for good? considering that I only need to represent my data in key,value structure and only require fast reading but not writing and the ability to be fault tolerant.
Thank you
If I were you I would start small and not try to optimize for big data just yet. A lot of blogs you read about the downsides of a NoSQL solution are around large data sets - or people that are trying to do relational things with a database designed for de-normalized data.
My list of databases to consider:
Mongo. It has huge community support and based on recent funding - it's going to be around for a while. It runs very well on a single instance and a basic replica set. It's easy to set up and free, so it's worth spending a day or two running your own tests to settle the issue once and for all. Don't trust a blog.
Couchbase. Supports key/value storage and also has persistence to disk. http://www.couchbase.com/couchbase-server/features Also has had some recent funding so hopefully that means stability. =)
CouchDB/PouchDB. You can use PouchDB purely on the client side and it can connect to a server side CouchDB. CouchDB might not have the same momentum as Mongo or Couchbase, but it's an actively supported product and does key/value with persistence to disk.
Riak. http://basho.com/riak/. Another NoSQL that scales and is a key/value store.
You can install and run a proof-of-concept on all of the above products in a few hours. I would recommend this for the following reasons:
A given database might scale and hit your points, but be unpleasant to use. Consider picking a database that feels fun! Sort of akin to picking Ruby/Python over Java because the syntax is nicer.
Your use case and domain will be fairly unique. Worth testing various products to see what fits best.
Each database has quirks and you won't find those until you actually try one. One might have quirks that are passable, one will have quirks that are a show stopper.
The benefit of trying all of them is that they all support schemaless data, so if you write JSON, you can use all of them! No need to create objects in your code for each database.
If you abstract the database correctly in code, swapping out data stores won't be that painful. In other words, your code will be happier if you make it easy to swap out data stores.
This is only an option for really simple CMSes, but it sounds like that's what you're building.
If your blog is super-simple as you describe and your main concern is very high traffic then the best option might be to avoid a database entirely and have your CMS generate static files instead. By doing this, you eliminate all your database concerns completely.
It's not the best option if you're doing anything dynamic or complex, but in this small use case it might fit the bill.

ORM vs traditional database query, which are their fields?

ORM seems to be a fast-growing model, with both pros and cons in their side. From Ultra-Fast ASP.NET of Richard Kiessig (http://www.amazon.com/Ultra-Fast-ASP-NET-Build-Ultra-Scalable-Server/dp/1430223839/ref=pd_bxgy_b_text_b):
"I love them because they allow me to develop small, proof-of-concept sites extremely quickly. I can side step much of the SQL and related complexity that I would otherwise need and focus on the objects, business logic and presentation. However, at the same time, I also don't care for them because, unfortunately, their performance and scalability is usually very poor, even when they're integrated with a comprehensive caching system (the reason for that becomes clear when you realize that when properly configured, SQL Server itself is really just a big data cache"
My questions are:
What is your comment about Richard's idea. Do you agree with him or not? If not, please tell why.
What is the best suitable fields for ORM and traditional database query? in other words, where you should use ORM and where you should use traditional database query :), which kind/size... of applications you should undoubtedly choose ORM/traditional database query
Thanks in advance
I can't agree to the common complain about ORMs that they perform bad. I've seen many plain-SQL applications until now. While it is theoretically possible to write optimized SQL, in reality, they ruin all the performance gain by writing not optimized business logic.
When using plain SQL, the business logic gets highly coupled to the db model and database operations and optimizations are up to the business logic. Because there is no oo model, you can't pass around whole object structures. I've seen many applications which pass around primary keys and retrieve the data from the database on each layer again and again. I've seen applications which access the database in loops. And so on. The problem is: because the business logic is already hardly maintainable, there is no space for any more optimizations. Often when you try to reuse at least some of your code, you accept that it is not optimized for each case. The performance gets bad by design.
An ORM usually doesn't require the business logic to care too much about data access. Some optimizations are implemented in the ORM. There are caches and the ability for batches. This automatic (and runtime-dynamic) optimizations are not perfect, but they decouple the business logic from it. For instance, if a piece of data is conditionally used, it loads it using lazy loading on request (exactly once). You don't need anything to do to make this happen.
On the other hand, ORM's have a steep learning curve. I wouldn't use an ORM for trivial applications, unless the ORM is already in use by the same team.
Another disadvantage of the ORM is (actually not of the ORM itself but of the fact that you'll work with a relational database an and object model), that the team needs to be strong in both worlds, the relational as well as the oo.
Conclusion:
ORMs are powerful for business-logic centric applications with data structures that are complex enough that having an OO model will advantageous.
ORMs have usually a (somehow) steep learning curve. For small applications, it could get too expensive.
Applications based on simple data structures, having not much logic to manage it, are most probably easier and straight forward to be written in plain sql.
Teams with a high level of database knowledge and not much experience in oo technologies will most probably be more efficient by using plain sql. (Of course, depending on the applications they write it could be recommendable for the team to switch the focus)
Teams with a high level of oo knowledge and only basic database experience are most probably more efficient by using an ORM. (same here, depending on the applications they write it could be recommendable for the team to switch the focus)
ORM is pretty old, at least in the Java world.
Major problems with ORM:
Object-Oriented model and Relational model are quite different.
SQL is a high level language to access data based on relational algebra, different from any OO language like C#, Java or Visual Basic.Net. Mixing those can you the worst of two worlds, instead of the best
For more information search the web on things like 'Object-relational impedance mismatch'
Either case, a good ORM framework saves you on quite some boiler-plate code. But you still need to have knowlegde of SQL, how to setup a good SQL databasemodel. Start with creating a good databasemodel using SQL, then base your OO model on that (not the other way around)
However, the above only holds if you really need to use a SQL database. I recommend looking into NoSQL movement as well. There's stuff like Cassandra, Couch-db. While google'ing for .net solutions I found this stackoverflow question: https://stackoverflow.com/questions/1777103/what-nosql-solutions-are-out-there-for-net
I'm the author of the book with the text quoted in the question.
Let me emphatically add that I am not arguing against using business objects or object oriented programming.
One issue I have with conventional ORM -- for example, LINQ to SQL or Entity Framework -- is that it often leads to developers making DB calls when they don't even realize that they're doing so. This, in turn, is a performance and scalability killer.
I review lots of websites for performance issues, and have found that DB chattiness is one of the most common causes of serious problems. Unfortunately, ORM tends to encourage chattiness, in spades.
The other complaints I have about ORM include:
No support for command batching
No support for multiple result sets
No support for table valued parameters
No support for native async calls (making them from a background thread doesn't count)
Support for SqlDependency and SqlCacheDependency is klunky if/when it works at all
I have no objection to using ORM tactically, to address specific business issues. But I do object to using it haphazardly, to the point where developers do things like make the exact same DB call dozens of time on the same page, or issue hugely expensive queries without considering caching and change notifications, or totally neglect async operations when scalability is a concern.
This site uses Linq-to-SQL I believe, and it's 'fairly' high traffic... I think that the time you save from writing the boiler plate code to access/insert/update simple items is invaluable, but there is always the option to drop down to calling a SPROC if you have something more complex, where you know you can write some screaming fast SQL directly.
I don't think that these things have to be mutually exclusive - use the advantages of both, and if there are sections of your application that start to slow down, then you can optimise as you need to.
ORM is far older than both Java and .NET. The first one I knew about was TopLink for Smalltalk. It's an idea as old as persistent objects.
Every "CRUD on the web" framework like Ruby on Rails, Grails, Django, etc. uses ORM for persistence because they all presume that you are starting with a clean sheet object model: no legacy schema to bother with. You start with the objects to model your problem and generate the persistence from it.
It often works the other way with legacy systems: the schema is long-lived, and you may or may not have objects.
It's astonishing how quickly you can get a prototype up and running with "CRUD on the web" frameworks, but I don't see them being used to develop enterprise apps in large corporations. Maybe that's a Fortune 500 prejudice.
Database admins that I know tell me they don't like the SQL that ORMs generate because it's often inefficient. They all wish for a way to hand-tune it.
I agree with most points already made here.
ORM's are not new in .NET, LLBLGen has been around for a long time, I've been using them for >5 years now in .NET.
I've seen very bad performing code written without ORMs (in-efficient SQL queries, bad indexes, nested database calls - ouch!) and bad code written with ORMs - I'm sure I've contributed to some of the bad code too :)
What I would add is that an ORM is generally a powerful and productivity-enhancing tool that allows you to stop worrying about plumbing db code for most of your application and concentrate on the application itself. When you start trying to write complex code (for example reporting pages or complex UI's) you need to understand what is happening underneath the hood - ignorance can be very costly. But, used properly, they are immensely powerful, and IMO won't have a detrimental effect on your apps performance. I for one wouldn't be happy on a project that didn't use an ORM.
Programming is about writing software for business use. The more we can focus on business logic and presentation and less with technicalities that only matter at certain points in time (when software goes down, when software needs upgrading, etc), the better.
Recently I read about talks of scalability from a Reddit founder, from here, and one line of him that caught my attention was this:
"Having to deal with the complexities
of relational databases (relations,
joins, constraints) is a thing of the
past."
From what I have watched, maintaining a complex database schema, when it comes to scalability, becomes a major pain as the site grows (you add a field, you reassign constraints, re-map foreign keys...etc). It was not entirely clear to me as to why is that. They're not using a NOSQL database though, they're in Postgres.
Add to that, here comes ORM, another layer of abstraction. It simplifies code writing, but almost often at a performance penalty. For me, a simple database abstraction library will do, much like lightweight AR libs out there together with database-specific "plain text" queries. I can't show you any benchmark but with the ORMs I have seen, most of them say that "ORM can often be slow".
Richard covers both sides of the coin, so I agree with him.
As for the fields, I really don't quite get the context of the "fields" you are asking about.
As others have said, you can write underperforming ORM code, and you can also write underperforming SQL.
Using ORM doesn't excuse you from knowing your SQL, and understanding how a query fits together. If you can optimize a SQL query, you can usually optimize an ORM query. For example, hibernate's criteria and HQL queries let you control which associations are joined to improve performance and avoid additional select statements. Knowing how to create an index to improve your most common query can make or break your application performance.
What ORM buys you is uniform, maintainable database access. They provide an extra layer of verification to ensure that your OO code matches up as closely as possible with your database access, and prevent you from making certain classes of stupid mistake, like writing code that's vulnerable to SQL injection. Of course, you can parameterize your own queries, but ORM buys you that advantage without having to think about it.
Never got anything but pain and frustration from ORM packages. If I'd write my SQL the way they autogen it - yeah I'd claim to be fast while my code would be slow :-) Have you ever seen SQL generated by an ORM ? Barely has PK-s, uses FK-s only for misguided interpretation of "inheritance" and if it wants to do paging it dumps the whole recordset on you and then discards 90% of it :-))) Then it locks everything in sight since it has to take in a load of records like it went back to 50 yr old IBM's batch processing.
For a while I thought that the biggest problem with ORM was splintering (not going to have a standard in 50 yrs - every year different API, pardon "model" :-) and ideologizing (everyone selling you a big philosophy - always better than everyone else's of course :-) Then I realized that it was really the total amateurism that's the root cause of the mess and everything else is just the consequence.
Then it all started to make sense. ORM was never meant to be performant or reliable - that wasn't even on the list :-) It was academic, "conceptual" toy from the day one, the consolation prize for professors pissed off that all their "relational" research papers in Prolog went down the drain when IBM and Oracle started selling that terrible SQL thing and making a buck :-)
The closest I came to trusting one was LINQ but only because it's possible and quite easy to kick out all "tracking" and use is just as deserialization layer for normal SQL code. Then I read how the object that's managing connection can develop spontaneous failures that sounded like premature GC while it still had some dangling stuff around. No way I was going to risk my neck with it after that - nope, not my head :-)
So, let me make a list:
Totally sloppy code - not going to suffer bugs and poor perf
Not going to take deadlocks from ORM's 10-100 times longer "transactions"
Drastic reduction of capabilities - SQL has huge expressive power these days
Tying you up into fringe and sloppy API (every ORM aims to hijack your codebase)
SQL queries are highly portable and SQL knowledge is totally portable
I still have to know SQL just to clean up ORM's mess anyway
For "proof-of-concept" I can just serialize to binary or XML files
not much slower, zero bug libraries and one XPath can select better anyway
I've actually done heavy traffic web sites all from XML files
if I actually need real graph then I have no use for DB - nothing real to query
I can serialize a blob and dump into SQL in like 3 lines of code
If someone claims that he does it all from DB to UI - keep your codebase locked :-)
and backup your payroll DB - you'll thank me latter :-)))
NoSQL bases are more honest than ORM - "we specialize in persistence"
and have better code quality - not surprised at all
That would be the short list :-) BTW, modern SQL engines these days do trees and spatial indexing, not to mention paging without a single record wasted. ORM-s are actually "solving" problems of 10yrs ago and promoting amateurism. To that extent NoSQL, also known as document

What's the meaning of ORM?

I ever developed several projects based on python framework Django. And it greatly improved my production. But when the project was released and there are more and more visitors the db becomes the bottleneck of the performance.
I try to address the issue, and find that it's ORM(django) to make it become so slow. Why? Because Django have to serve a uniform interface for the programmer no matter what db backend you are using. So it definitely sacrifice some db's performance(make one raw sql to several sqls and never use the db-specific operation).
I'm wondering the ORM is definitely useful and it can:
Offer a uniform OO interface for the progarammers
Make the db backend migration much easier (from mysql to sql server or others)
Improve the robust of the code(using ORM means less code, and less code means less error)
But if I don't have the requirement of migration, What's the meaning of the ORM to me?
ps. Recently my friend told me that what he is doing now is just rewriting the ORM code to the raw sql to get a better performance. what a pity!
So what's the real meaning of ORM except what I mentioned above?
(Please correct me if I made a mistake. Thanks.)
You have mostly answered your own question when you listed the benefits of an ORM. There are definitely some optimisation issues that you will encounter but the abstraction of the database interface probably over-rides these downsides.
You mention that the ORM sometimes uses many sql statements where it could use only one. You may want to look at "eager loading", if this is supported by your ORM. This tells the ORM to fetch the data from related models at the same time as it fetches data from another model. This should result in more performant sql.
I would suggest that you stick with your ORM and optimise the parts that need it, but, explore any methods within the ORM that allow you to increase performance before reverting to writing SQL to do the access.
A good ORM allows you to tune the data access if you discover that certain queries are a bottleneck.
But the fact that you might need to do this does not in any way remove the value of the ORM approach, because it rapidly gets you to the point where you can discover where the bottlenecks are. It is rarely the case that every line of code needs the same amount of careful hand-optimisation. Most of it won't. Only a few hotspots require attention.
If you write all the SQL by hand, you are "micro optimising" across the whole product, including the parts that don't need it. So you're mostly wasting effort.
here is the definition from Wikipedia
Object-relational mapping is a programming technique for converting data between incompatible type systems in relational databases and object-oriented programming languages. This creates, in effect, a "virtual object database" that can be used from within the programming language.
a good ORM (like Django's) makes it much faster to develop and evolve your application; it lets you assume you have available all related data without having to factor every use in your hand-tuned queries.
but a simple one (like Django's) doesn't relieve you from good old DB design. if you're seeing DB bottleneck with less than several hundred simultaneous users, you have serious problems. Either your DB isn't well tuned (typically you're missing some indexes), or it doesn't appropriately represents the data design (if you need many different queries for every page this is your problem).
So, i wouldn't ditch the ORM unless you're twitter or flickr. First do all the usual DB analysis: You see a lot of full-table scans? add appropriate indexes. Lots of queries per page? rethink your tables. Every user needs lots of statistics? precalculate them in a batch job and serve from there.
ORM separates you from having to write that pesky SQL.
It's also helpful for when you (never) port your software to another database engine.
On the downside: you lose performance, which you fix by writing a custom flavor of SQL - that it tried to insulate from having to write in the first place.
ORM generates sql queries for you and then return as object to you. that's why it slower than if you access to database directly. But i think it slow a little bit ... i recommend you to tune your database. may be you need to check about index of table etc.
Oracle for example, need to be tuned if you need to get faster ( i don't know why, but my db admin did that and it works faster with queries that involved with lots of data).
I have recommendation, if you need to do complex query (eg: reports) other than (Create Update Delete/CRUD) and if your application won't use another database, you should use direct sql (I think Django has it feature)

What is the best practice for persistence right now?

I come from a java background.
But I would like a cross-platform perspective on what is considered best practice for persisting objects.
The way I see it, there are 3 camps:
ORM camp
direct query camp e.g. JDBC/DAO, iBatis
LINQ camp
Do people still handcode queries (bypassing ORM) ? Why, considering the options available via JPA, Django, Rails.
There is no one best practice for persistence (although the number of people screaming that ORM is best practice might lead you to believe otherwise). The only best practice is to use the method that is most appropriate for your team and your project.
We use ADO.NET and stored procedures for data access (though we do have some helpers that make it very fast to write such as SP class wrapper generators, an IDataRecord to object translator, and some higher order procedures encapsulating common patterns and error handling).
There are a bunch of reasons for this which I won't go into here, but suffice to say that they are decisions that work for our team and that our team agrees with. Which, at the end of the day, is what matters.
I am currently reading up on persisting objects in .net. As such I cannot offer a best practice, but maybe my insights can bring you some benefit. Up until a few months ago I have always used handcoded queries, a bad habit from my ASP.classic days.
Linq2SQL - Very lightweight and easy to get up to speed. I love the strongly typed querying possibilities and the fact that the SQL is not executed at once. Instead it is executed when your query is ready (all the filters applied) thus you can split the data access from the filtering of the data. Also Linq2SQL lets me use domain objects that are separate from the data objects which are dynamically generated. I have not tried Linq2SQL on a larger project but so far it seems promising. Oh it only supports MS SQL which is a shame.
Entity Framework - I played around with it a little bit and did not like it. It seems to want to do everything for me and it does not work well with stored procedures. EF supports Linq2Entities which again allows strongly typed queries. I think it is limited to MS SQL but I could be wrong.
SubSonic 3.0 (Alpha) - This is a newer version of SubSonic which supports Linq. The cool thing about SubSonic is that it is based on template files (T4 templates, written in C#) which you can easily modify. Thus if you want the auto-generated code to look different you just change it :). I have only tried a preview so far but will look at the Alpha today. Take a look here SubSonic 3 Alpha. Supports MS SQL but will support Oracle, MySql etc. soon.
So far my conclusion is to use Linq2SQL until SubSonic is ready and then switch to that since SubSonics templates allows much more customization.
There is at least another one: System Prevalence.
As far as I can tell, what is optimal for you depends a lot on your circumstances. I could see how for very simple systems, using direct queries still could be a good idea. Also, I have seen Hibernate fail to work well with complex, legacy database schemata, so using an ORM might not always be a valid option. System Prevalence is supposed to unbeatingly fast, if you have enough memory to fit all your objects into RAM. Don't know about LINQ, but I suppose it has its uses, too.
So, as so often, the answer is: know a variety of tools for the job, so that you are able to use the one that's most appropriate for your specific situation.
The best practice depends on your situation.
If you need database objects in table structures with some sort of meaningful structure (so one column per field, one row per entity and so on) you need some sort of translation layer inbetween objects and the database. These fall into two camps:
If there's no logic in the database (just storage) and tables map to objects well, then an ORM solution can provide a quick and reliable persistence system. Java systems like Toplink and Hibernate are mature technologies for this.
If there is database logic involved in persistence, or your database schema has drifted from your object model significantly, stored procedures wrapped by Data Access Objects (with further patterns as you like) is a little more involved than ORM but more flexible.
If you don't need structured storage (and you need to be really sure that you don't, as introducing it to existing data is not fun), you can store serialized object graphs directly in the database, bypassing a lot of complexity.
I prefer to write my own SQL, but I apply all my refactoring techniques and other "good stuff" when I do so.
I have written data access layers, ORM code generators, persistence layers, UnitOfWork transaction management, and LOTS of SQL. I've done that in systems of all shapes and sizes, including extremely high-performance data feeds (forty thousand files totaling forty million transactions per day, each loaded within two minutes of real-time).
The most important criteria is destiny, as in control thereof. Don't ever let your ORM tool be an obstacle to getting your work done, or an excuse for not doing it right. Ultimately, all good SQL is hand-written and hand-tuned, but some decent tools can help you get a good first draft quickly.
I treat this issue the same way that I do my UI design. I write all my UIs directly in code, but I might use a visual designer to prototype some essential elements that I have in mind, then I tear apart the code it generates in order to kickstart my own.
So, use an ORM tool in any of its manifestations as a way to get a decent example--look at how it solves many of the issues that arise (key generation, associations, navigation, etc.). Tear apart its output, make it your own, then reuse the heck out of it.

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