In my CRC8.c I have this function:
BOOL isCRCValid(const UINT8 *ptr, UINT8 Len, UINT8 CRCChar){
return CRCChar == generateCRC(ptr, Len); //generareCRC returns a UINT8
}
It's is declared in CRC8.h, but PC Lint returns me the following.
Info 714: Symbol 'isCRCValid(const unsigned char *, unsigned char, unsigned
char)' not referenced
Info 830: Location cited in prior message
Help says 714 is:
714: Symbol 'Symbol' (Location) not referenced -- The named external
variable or external function was defined but not referenced. This
message is suppressed for unit checkout (-u option).
and 830 is:
830 Location cited in prior message -- Message 830 is a vehicle to
convey in 'canonical form' the location information embedded within
some other message. For example, consider the (somewhat simplified)
message:
file x.c line 37: Declaration for 'x' conflicts with line 22
This contains the location ("line 22") embedded in the text of the
message. Embedded location information is not normally understood by
editors and IDE's (Interactive Development Environments) which can
only position to the nominal location (line 37 in this example). By
adding this additional message with the nominal location of line 22
the user can, by stepping to the next message and, in this case, see
what the 'conflict' is all about. This message and message 831 below
do not follow the ordinary rules for message suppression. If they did
then when the option -w2 was employed to turn the warning level down
to 2 these messages (at level 3) would also vanish. Instead they
continue to function as expected. To inhibit them you need to
explicitly turn them off using one of:
-e830
-e831
They may be restored via +e830 and +e831; they state of suppression
can be saved and restored via the -save -restore options. Options such
as -e8* and -e{831} will have no effect.
As I'm newbie with PC Lint, and relative newbie with C, I'm not achieving resolving this problem.
Can anyone help me with this problem?
The message simply means that PCLint didn't find anything that actually uses this function, so it could be dead code/candidate for removal.
It could also mean that you did not use the input arguments in your function.
Related
In a script I often call the function Rcplex(), which prints "CPLEX environment opened" and "Closed CPLEX environment" to the console. Since the function is called rather frequently, it prints this very often, which is quite annoying. Is there a way to suppress this? I tried sink(), suppressWarnings/Messages or invisible(catch.output()) but none of these did the trick. I proceeded to check the code of Rcplex() and found where the printing to the console happens. Rcplex() calls an underlying C-function (Rcplex.c). In the code of rcplex.c I located the commands which cause the printing:
REprintf("CPLEX environment opened\n");
REprintf("Closed CPLEX environment\n");
Is there a way to capture the output from REprintf() so that it does not get printed to the R-console? One way would obviously be to mess around with the Rcplex.c file and delete the corresponding lines. However, this would not be a very clean solution, which is why I'm asking for another way to capture the output from C-functions.
You had problems using sink() and capture.output() normally because sink() does not redirect output from REprintf, as we see in comments from the source code for REprintf:
/* =========
* Printing:
* =========
*
* All printing in R is done via the functions Rprintf and REprintf
* or their (v) versions Rvprintf and REvprintf.
* These routines work exactly like (v)printf(3). Rprintf writes to
* ``standard output''. It is redirected by the sink() function,
* and is suitable for ordinary output. REprintf writes to
* ``standard error'' and is useful for error messages and warnings.
* It is not redirected by sink().
However, we can use type = "message" to deal with this; from help("capture.output"):
Messages sent to stderr() (including those from message, warning and
stop) are captured by type = "message". Note that this can be "unsafe" and should only be used with care.
First I make a C++ function with the same behavior you're dealing with:
#include <Rcpp.h>
using namespace Rcpp;
// [[Rcpp::export]]
NumericVector example_function(NumericVector x) {
REprintf("CPLEX environment opened\n");
REprintf("Closed CPLEX environment\n");
// As mentioned by Dirk Eddelbuettel in the comments,
// Rcpp::Rcerr goes into the same REprintf() stream:
Rcerr << "Some more stuff\n";
return x;
}
If I call it from R normally, I get:
example_function(42)
CPLEX environment opened
Closed CPLEX environment
Some more stuff
[1] 42
However, I could instead do this:
invisible(capture.output(example_function(42), type = "message"))
[1] 42
And while the output is is printed to the console, the message is not.
Warning
I would be remiss if I didn't mention the warning from the help file I quoted above:
Note that this can be "unsafe" and should only be used with care.
The reason is that this will eliminate all output from actual errors as well. Consider the following:
> log("A")
Error in log("A") : non-numeric argument to mathematical function
> invisible(capture.output(log("A"), type = "message"))
>
You may or may not want to therefore send the captured output to a text file in case you have to diagnose something that went wrong. For example:
invisible(capture.output(log("A"), type = "message", file = "example.txt"))
Then I don't have to see the message in the console, but if I need to check example.txt afterward, the message is there:
Error in log("A") : non-numeric argument to mathematical function
We are analyzing sequencing data while filtering and trimming fastq files encountered following error. Is the following error due to unavailability of core for processing commands?
Error in colnames<-(*tmp*, value = c("cs103_R1_dada.fastq", "cs110_R1_dada.fastq", : attempt to set 'colnames' on an object with less than two dimensions In addition: Warning message: In mclapply(seq_len(n), do_one, mc.preschedule = mc.preschedule, : all scheduled cores encountered errors in user code >
As pengchy suggested there may be something wrong with function.
try the same call by using lapply and error message will be more informative.
To clarify on what #f2003596 and #HelloWorld said: This just means that a crash occurred within the function you called, i.e. while it was executing that function. But this does not necessarily mean that your function is incorrect. For example, you get the same error when a variable has not been found.
That would mean your R function has a crash.
Note: If you include an unexpected argument in mclapply you also can get this error message. I put mC.cores instead of mc.cores by mistake and I got it.
I am working on a remote red-hat server and there I'm developing a c application to insert data in to a remote oracle database. So first i installed the OCI instant client rpm on the server and tried to compile a sample program. after certain linkages I could compile it. But then when I am going to run it. It exits giving an error saying
ORA-12162: TNS:net service name is incorrectly specified
The sample code I used is from the blog (refer to this code in case you need to clarify the things.where I’m quoting only few pieces to this post) René Nyffenegger's collection of things on the web
René Nyffenegger on Oracle
(refer to this code in case you need to clarify the things.where I’m quoting only few pieces to this post)
In the code I added some prints to check for the error And it seems like It gets stuck in the OCIServerAttach() function r gives a printed walue of -1
r=OCIServerAttach(srv, err, dbname, strlen(dbname), (ub4) OCI_DEFAULT);
printf("r value %d",r);
if (r != OCI_SUCCESS) {
checkerr(err, r);
goto clean_up;
}
Another point is that in the compilation process it gives a warning saying that a certain libry is not include. but the exicutable file is created. Here is the massage I get in the compilation process.
[laksithe#loancust ~]$ gcc -L$ORACLE_HOME/lib/ -L$ORACLE_HOME/rdbms/lib/ -o oci_test oci_test.o -L/usr/lib/oracle/12.1/client64/lib -lclntsh `cat $ORACLE_HOME/lib/sysliblist`
cat: /lib/sysliblist: No such file or directory
Going through the web I found that by creating a tnsnames.ora file with the connection details I could solve the problem. But even It didn't work for me. Here is the link for that blog blog
It has been a week since this error and I cold'nt solve it. could someone please help me.
connection string format I used is abc.ghi.com:1521/JKLMN
My recommendation is to bypass tnsnames completely. Oracle has always allowed you to put in the direct connection details, but EZConnect makes that even easier.
When you format your connection string, instead of listing the TNS name, use the actual connection properties in the following format:
servername:port/service name
For Example
MyOracle.MyCompany.Com:1521/SalesReporting
Your connection string might also require direct=true, but I'm honestly not sure.
I like the idea of tnsnames, but it's a double edged sword. When it works, it's great. When it doesn't, you want to throw something. With EZConnect, it always works.
By the way, if you don't know the properties of the three items above, find a machine that connect via tnsnames and:
tnsping <your TNS-named database>
I know there are multiple questions regarding this subject, but they did not help.
When trying to compile, whatever, I keep getting the same error:
arm-none-eabi-gcc.exe: error: CreateProcess: No such file or directory
I guess it means that it can not find the compiler.
I have tried tweaking the path settings
C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\nxp\LPCXpresso_7.6.2
326\lpcxpresso\tools\bin;
Seems to be right?
I have tried using Sysinternals process monitor
I can see that a lot of arm-none-eabi-gcc.exe are getting a result of name not found but there are a lot of successful results too.
I have also tried reinstalling the compiler and the LPCXpresso, no luck.
If i type arm-none-eabi-gcc -v i get the version, so it means its working
but when i am trying to compile in CMD like this arm-none-eabi-gcc led.c
i get the same error as stated above
arm-none-eabi-gcc.exe: error: CreateProcess: No such file or directory
Tried playing around more with PATH in enviroments, no luck. I feel like something is stopping LPCXpresso from finding the compiler
The only Antivirus this computer has is Avira and i disabled it. I also allowed compiler and LPCXpresso through the firewall
I have tried some more things, i will add it shortly after trying to duplicate the test.
It seems your problem is a happy mess with Vista and GCC. Long story short, a CRT function, access, has a different behavior on Windows and Linux. This difference is actually mentioned on Microsoft documentation, but the GCC folks didn't notice. This leads to a bug on Vista because this version of Windows is more strict on this point.
This bug is mentioned here : https://gcc.gnu.org/bugzilla/show_bug.cgi?id=33281
I have no proof that your problem comes from here, but the chances are good.
The solutions :
Do not use Vista
Recompile arm-none-eabi-gcc.exe with the flag -D__USE_MINGW_ACCESS
Patch arm-none-eabi-gcc.exe
The 3rd is the easiest, but it's a bit tricky. The goal is to hijack the access function and add an instruction to prevent undesired behavior. To patch your gcc, you have two solutions : you upload your .exe and I patch it for you, or I give you the instructions to patch it yourself. (I can also patch it for you, then give the instructions if it works). The patching isn't really hard and doesn't require advanced knowledge, but you must be rigorous.
As I said, I don't have this problem myself, so I don't know if my solution really works. The patch seems to be working for this problem.
EDIT2:
The exact problem is that the linux access have a parameter flag to check whether a file is executable. The Windows access cannot check for this. The behavior of most Windows versions is just to ignore this flag, and check if the file exists instead, which will usually give the same behavior. The problem is that Vista doesn't ignore this, and whenever the access is used to check for executability, it will return an error. This lead to GCC programs to think that some executables are not here. The patch induced by -D__USE_MINGW_ACCESS, or done manually, is to delete the flag when access is called, thus checking for existence instead just like other Windows versions.
EDIT:
The patching is actually needed for every GCC program that invokes other executables, and not only gcc.exe. So far there is only gcc.exe and collect2.exe.
Here are the patching instruction :
Backup your arm-none-eabi-gcc.exe.
Download and install CFF Explorer (direct link here).
Open arm-none-eabi-gcc.exe with CFF Explorer.
On the left panel, click on Import Directory.
In the module list that appears, click on the msvcrt.dll line.
In the import list that appears, find _access. Be careful here, the list is long, and there are multiple _access entries. The last one (the very last entry for me) is probably the good one.
When you click on the _access line, an address should appear on the list header, in the 2nd column 2nd row, just below FTs(IAT). Write down that address on notepad (for me, it is 00180948, it may be different). I will refer to this address as F.
On the left panel, click on Address Converter.
Three fields should appear, enter address F in the File Offset field.
Write down on notepad a 6 bytes value : the first two bytes are FF 25, the last 4 are the address that appeared in the VA field, IN REVERSE. For example, if 00586548 appeared in the VA field, write down FF 25 48 65 58 00 (spaces added for legibility). I will refer to this value as J. This value J is the instruction that jumps to the _access function.
On the left panel, click on Section Headers.
In the section list that appeared on the right, click on the .text line (the .text section is where the code resides).
In the editor panel that appeared below, click on the magnifier and, in the Hex search bar, search for a series of 11 90 (9090909090..., 90 is NOP in assembly). This is to find a code cave (unused space) to insert the patch, which is 11 bytes long. Once you found a code cave, write down the offset of the first 90. The exact offset is displayed on the very bottom as Pos : xxxxxxxx. I will refer to this offset as C.
Use the editor to change the sequence of 11 90 : the first 5 bytes are 80 64 E4 08 06. These 5 bytes are the instruction that prevents the wrong behavior. The last 6 bytes are the value J (edit the next 6 bytes to J, ex. FF 25 48 65 58 00), to jump back to the _access function.
Click on the arrow icon (Go To Offset) a bit below, and enter 0, to navigate to the beginning of the file.
Use the Hex search bar again to search for value J. If you find the bytes you just modified, skip. The J value you need is located around many value containing FF 25 and 90 90. That is the DLL jump table. Write down the offset of the value J you found (offset of the first byte, FF). I will refer to this offset as S. Note 1: If you can't find the value, maybe you picked the wrong _access in step 6, or did something wrong between step 6 to 10. Note 2: The search bar doesn't loop when it hit the end; go to offset 0 manually to re-find.
Use a hexadecimal 32-bit 2-complement calculator (like this one : calc.penjee.com) to calculate C - S - 5. If your offset C is 8C0 and your offset S is 6D810, you must obtain FF F9 30 AB (8C0 minus 6D810, minus 5).
Replace the value J you found in the file (at step 16) by 5 bytes : the first byte is E9, the last 4 are the result of the last operation, IN REVERSE. If you obtained FF F9 30 AB, you must replace the value J (ex: FF 25 48 65 58 00) by E9 AB 30 F9 FF. The 6th byte of J can be left untouched. These 5 bytes are the jump to the patch.
File -> Save
Notes : You should have modified a total of 16 bytes. If the patched program crash, you did something wrong. Even if it doesn't work, this patch can't induce a crash.
Let me know if you have difficulties somewhere.
I am trying to write an interface between RSPEC (ruby flavoured BDD) and a Windows application. The application itself is written in an obscure language, but it has a C API to provide access. I've gone with Ruby/DL but am having difficulties getting even the most basic call to a DLL method to work. Here is what I have so far, in a file called gt4r.rb:
require 'dl/import'
module Gt4r
extend DL::Importable
dlload 'c:\\gtdev\\r321\\bin\\gtvapi'
# GTD initialization/termination functions
extern 'int GTD_init(char *[], char *, char *)'
extern 'int GTD_initialize(char *, char *, char *)'
extern 'int GTD_done(void)'
extern 'int GTD_get_error_message(int, char **)'
end
My reading so far suggests that this is all I need to get going, so I wrote up a RSPEC example:
require 'gt4r'
##test_environment = "INCLUDE=C:\\graphtalk\\env\\aiadev\\config\\aiadev.ini"
##normal_user = "BMCHARGUE"
describe Gt4r do
it 'initializes' do
rv = Gt4r.gTD_initialize ##normal_user, ##normal_user, ##test_environment
rv.should == 0
end
end
And when run...
C:\code\GraphTalk>spec -fs -rgt4r gt4r_spec.rb
Gt4r
- initializes (FAILED - 1)
1)
'Gt4r initializes' FAILED
expected: 0,
got: 13 (using ==)
./gt4r_spec.rb:9:
Finished in 0.031 seconds
1 example, 1 failure
The return value (13) is an actual return code, meaning an error, but when I try to add the gTD_get_error_message call to my RSPEC, I can't get the parameters to work.
Am I heading in the right direction and can anyone point to the next thing I can try?
Thanks,
Brett
A follow up to this question, showing the part that fails when I try to get the error message from my target library:
require 'gt4r'
##test_environment = "INCLUDE=C:\\graphtalk\\env\\aiadev\\config\\aiadev.ini"
##normal_user = "BMCHARGUE"
describe Gt4r do
it 'initializes' do
rv = Gt4r.gTD_initialize ##normal_user, ##normal_user, ##test_environment
Gt4r.gTD_get_error_message rv, #msg
#msg.should == ""
rv.should == 0
end
end
I expect the error message to be returned in #msg, but when run I get the following:
Gt4r
(eval):5: [BUG] Segmentation fault
ruby 1.8.6 (2008-08-11) [i386-mswin32]
This application has requested the Runtime to terminate it in an unusual way.
Please contact the application's support team for more information.
And this if I use a symbol (:msg) instead:
C:\code\GraphTalk\gt4r_dl>spec -fs -rgt4r gt4r_spec.rb
Gt4r
- initializes (ERROR - 1)
1)
NoMethodError in 'Gt4r initializes'
undefined method `to_ptr' for :msg:Symbol
(eval):5:in `call'
(eval):5:in `gTD_get_error_message'
./gt4r_spec.rb:9:
Finished in 0.046 seconds
1 example, 1 failure
Clearly I am missing something about passing parameters between ruby and C, but what?
The general consensus is you want to avoid DL as much as possible. The (english) documentation is quite sketchy and the interface is difficult to use for anything but trivial examples.
Ruby native C interface is MUCH easier to program against. Or you could use FFI, which fills a similiar niche to DL, originally comes from the rubinius project and has recently been ported to "normal" ruby. It has a nicer interface and is much less painful to use:
http://blog.headius.com/2008/10/ffi-for-ruby-now-available.html
The return value (13) is an actual
return code, meaning an error, but
when I try to add the
gTD_get_error_message call to my
RSPEC, I can't get the parameters to
work.
It might help posting the error instead of the code that worked :)
Basically, once you start having to deal with pointers as in (int, char **), things get ugly.
You need to allocate the data pointer for msg to be written to, since otherise C will have nowhere to write the error messages. Use DL.mallo.