How to cap memory usage by Extensible Storage Engine (JetBlue)? - database

I have an app that every so often hits a ESE database quite hard and then stops for a long time. After hitting the database memory usage goes way up (over 150MB) and stays high. I'm assuming ESE has lots of cached data.
Is there a way to cap the memory usage by ESE? I'm happy to suffer any perf hit
the only way I've seen to drop the memory usage is to close the DB

You can control the database cache size by setting the database cache size system parameter (JET_paramCacheSize). That number can be changed on-the-fly.
You might not need to set it though: by default ESENT will manage its cache size automatically by looking at available system memory, system paging and database I/O load. If you have hundreds of MB of free memory then ESENT won't see any reason to reduce the cache size. On the other hand. if you start using the memory on your system you should find that ESENT will automatically reduce the size of the database cache in your application. You can set the limits for automatic cache sizing with the JET_paramCacheSizeMin and JET_paramCacheSizeMax parameters.
Documentation link for the sytem parameters: http://msdn.microsoft.com/en-us/library/ms683044.aspx

Related

Increased use of swap on AWS Aurora

I have an AWS RDS Aurora (PostgreSQL compatible) instance, which recently triggered an alert because of increased swap usage, which was caused by running some not optimized queries (big temporary tables and sequential scanning). Some basic AWS metrics looks like:
Blue line: freeable memory
Purple line: swap usage
Yellow line: freeable - swap
I have a few questions I could not find an answer, nowhere in AWS docs, forums nor on SO
Why the DB started allocating swap while it still had a lot of freeable memory?
Why it's not releasing the swap if it's no longer used? How to reduce the amount of used swap?
Why also adds to freeable memory?
You can find more details about the RDS swap memory in the AWS Knowledgebase: https://aws.amazon.com/premiumsupport/knowledge-center/troubleshoot-rds-swap-memory/.
Swap Memory is an essential part of the OS, which helps to extend the memory size by storing additional data in a DISK. When more memory is allocated, old contents of the RAM is written to the Swap location in the DISK and new contents is placed in the RAM. In this case, it indicates that a new query/a set of queries are executed which fetched/scanned more records thus more RAM is required. So the OS made room by moving some old data to Swap.
As per the KB, below is the reason for swap memory not going down,
Linux swap usage isn't cleared frequently, because clearing the swap
usage requires extra overhead to reallocate swap when it's needed and
when reloading pages. As a result, if swap space is used on your RDS
DB instance, even if swap space was used only one time, the SwapUsage
metrics don't return to zero.
Postgres caches the result of previous executions in RAM so that it can reduce the disk seek next time. You can improving the database performance by allocating sufficient buffer cache. This is an expected behavior. The size of this cache is configurable. Please refer: https://redfin.engineering/how-to-boost-postgresql-cache-performance-8db383dc2d8f
Also as mentioned in the KB, this could be due to queries that returns huge amount of record, or a load on the database. You can enable performance insights to get more details about the queries that are running during that time.
BTW, Performance insights may not be available in smaller RDS instances. In that case, you can look in to the binary logs to see which queries where executed. Also enabling slow query logs will help you.

In memory databases with LMDB

I have a project which uses BerkelyDB as a key value store for up to hundreds of millions of small records.
The way it's used is all the values are inserted into the database, and then they are iterated over using both sequential and random access, all from a single thread.
With BerkeleyDB, I can create in-memory databases that are "never intended to be preserved on disk". If the database is small enough to fit in the BerkeleyDB cache, it will never be written to disk. If it is bigger than the cache, then a temporary file will be created to hold the overflow. This option can speed things up significantly, as it prevents my application from writing gigabytes of dead data to disk when closing the database.
I have found that the BerkeleyDB write performance is too poor, even on an SSD, so I would like to switch to LMDB. However, based on the documentation, it doesn't seem like there is an option creating a non-persistent database.
What configuration/combination of options should I use to get the best performance out of LMDB if I don't care about persistence or concurrent access at all? i.e. to make it act like an "in-memory database" with temporary backing disk storage?
Just use MDB_NOSYNC and never call mdb_env_sync() yourself. You could also use MDB_WRITEMAP in addition. The OS will still eventually flush dirty pages to disk; you can play with /proc/sys/vm/dirty_ratio etc. to control that behavior.
From this post: https://lonesysadmin.net/2013/12/22/better-linux-disk-caching-performance-vm-dirty_ratio/
vm.dirty_ratio is the absolute maximum amount of system memory that can be filled with dirty pages before everything must get committed to disk. When the system gets to this point all new I/O blocks until dirty pages have been written to disk.
If the dirty ratio is too small, then you will see frequent synchronous disk writes.

Solr always use more than 90% of physical memory

I have 300000 documents stored in solr index. And used 4GB RAM for solr server. But It consumes more than 90% of physical memory. So I moved to my data to a new server which has 16 GB RAM. Again solr consumes more than 90% memory. I don't know how to resolve this issue. I used default MMapDirectory and solr version 4.2.0. Explain me if you have any solution or the reason for this.
MMapDirectory tries to use the OS memory (OS Cache) to the full as much as possible this is normal behaviour, it will try to load the entire index into memory if available. In fact, it is a good thing. Since these memory is available it will try to use it. If another application in the same machine demands more, OS will release it for it. This is one the reason why Solr/Lucene the queries are order of magnitude fast, as most of the call to server ends up memory (depending on the size memory) rather than disk.
JVM memory is a different thing, it can be controlled, only working query response objects and certain cache entries use JVM memory. So JVM size can be configured based on number request and cache entries.
what -Xmx value are you using when invoking the jvm? If you are not using an explicit value, the jvm will set one based on the machine features.
Once you give a max amount of heap to Solr, solr will potentially use all of it, if it needs to, that is how it works. If you to limit to say 2GB use -Xmx=2000m when you invoke the jvm. Not sure how large your docs are, but 300k docs would be considered a smallish index.

How do in-memory databases provide durability?

More specifically, are there any databases that don't require secondary storage (e.g. HDD) to provide durability?
Note:This is a follow up of my earlier question.
If you want persistence of transations writing to persistent storage is only real option (you perhaps do not want to build many clusters with independent power supplies in independent data centers and still pray that they never fail simultaneously). On the other hand it depends on how valuable your data is. If it is dispensable then pure in-memory DB with sufficient replication may be appropriate. BTW even HDD may fail after you stored your data on it so here is no ideal solution. You may look at http://www.julianbrowne.com/article/viewer/brewers-cap-theorem to choose replication tradeoffs.
Prevayler http://prevayler.org/ is an example of in-memory system backed up with persistent storage (and the code is extremely simple BTW). Durability is provided via transaction logs that are persisted on appropriate device (e.g. HDD or SSD). Each transaction that modifies data is written into log and the log is used to restore DB state after power failure or database/system restart. Aside from Prevayler I have seen similar scheme used to persist message queues.
This is indeed similar to how "classic" RDBMS works except that logs are only data written to underlying storage. The logs can be used for replication also so you may send one copy of log to a live replica other one to HDD. Various combinations are possible of course.
All databases require non-volatile storage to ensure durability. The memory image does not provide a durable storage medium. Very shortly after you loose power your memory image becomes invalid. Likewise, as soon as the database process terminates, the operating system will release the memory containing the in-memory image. In either case, you loose your database contents.
Until any changes have been written to non-volatile memory, they are not truely durable. This may consist of either writing all the data changes to disk, or writing a journal of the change being done.
In space or size critical instances non-volatile memory such as flash could be substituted for a HDD. However, flash is reported to have issues with the number of write cycles that can be written.
Having reviewed your previous post, multi-server replication would work as long as you can keep that last server running. As soon as it goes down, you loose your queue. However, there are a number of alternatives to Oracle which could be considered.
PDAs often use battery backed up memory to store their databases. These databases are non-durable once the battery runs down. Backups are important.
In-memory means all the data is stored in memory for it to be accessed. When data is read, it can either be read from the disk or from memory. In case of in-memory databases, it's always retrieved from memory. However, if the server is turned off suddenly, the data will be lost. Hence, in-memory databases are said to lack support for the durability part of ACID. However, many databases implement different techniques to achieve durability. This techniques are listed below.
Snapshotting - Record the state of the database at a given moment in time. In case of Redis the data is persisted to the disk after every two seconds for durability.
Transaction Logging - Changes to the database are recorded in a journal file, which facilitates automatic recovery.
Use of NVRAM usually in the form of static RAM backed up by battery power. In this case data can be recovered after reboot from its last consistent state.
classic in memory database can't provide classic durability, but depending on what your requirements are you can:
use memcached (or similar) to storing in memory across enough nodes that it's unlikely that the data is lost
store your oracle database on a SAN based filesystem, you can give it enough RAM (say 3GB) that the whole database is in RAM, and so disk seek access never stores your application down. The SAN then takes care of delayed writeback of the cache contents to disk. This is a very expensive option, but it is common in places where high performance and high availability are needed and they can afford it.
if you can't afford a SAN, mount a ram disk and install your database on there, then use DB level replication (like logshipping) to provide failover.
Any reason why you don't want to use persistent storage?

Will performance of a SQL server degrade if the DB can't fit in the memory?

Will the performance of a SQL server drastically degrade if the database is bigger than the RAM? Or does only the index have to fit in the memory? I know this is complex, but as a rule of thumb?
Only the working set or common data or currently used data needs to fit into the buffer cache (aka data cache). This includes indexes too.
There is also the plan cache, network buffers + other stuff too. MS have put a lot of work into memory management on SQL Server and it's works well, IMHO.
Generally, more RAM will help but it's not essential.
Yes, when indexes cant fit in the memory or when doing full table scans. Doing aggregate functions over data not in memory will also require many (and maybe random) disc reads.
For some benchmarks:
Query time will depend significantly
on whether the affected data currently
resides in memory or disk access is
required. For disk intensive
operations, the characteristics of the
disk sequential and random I/O
performance are also important.
http://www.sql-server-performance.com/articles/per/large_data_operations_p7.aspx
There for, don't expect the same performance if your db size > ram size.
Edit:
http://highscalability.com/ is full of examples like:
Once the database doesn't fit in RAM you hit a wall.
http://highscalability.com/blog/2010/5/3/mocospace-architecture-3-billion-mobile-page-views-a-month.html
Or here:
Even if the DB size is just 10% bigger than RAM size this test shows a 2.6 times drop in performance.
http://www.mysqlperformanceblog.com/2010/04/08/fast-ssd-or-more-memory/
Although, remember that this is for hot data, data that you want to query over and don't can cache. If you can, you can easily live with significant less memory.
All DB operations will have to be backed up by writing to disk, having more RAM is helpful, but not essential.
Loading the whole database into RAM is not practical. Database can be upto a Terabytes these days. There is little chance that anyone would buy so much RAM. I think performance will be optimal even if the size of the RAM available is one tenth of the size of the database.

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