Property-values database - database

I have a number of objects, each one have an arbitrary number of shared, and distinct property-value pairs (more specifically: files, and their related properties -such as width, and height values for images, album/artist/length for music files, etc). I'd like to be able to search for objects having specific property/values (such as: by album), group by property, etc.
What kind of database would you suggest for this scenario? Due to modularity (ability to add more properties on-the-fly), as well as the fact of common properties are <20% of all properties, the standard SQL with normalized tables wouldn't really cut it. I have already tried to approach the problem using a "skinny data model"; however I have faced with serious scalability issues.
Are there any specialized databases tuned for this scenario (BSD-licensed solutions preferred)? Or any alternative way to tweak standard RDBMs for this?

Searching for an object having some properties makes me think about a RDF datastore. Have a look a a RDF API (see JENA , sesame, virtuoso ).
Or BerkeleyDB ?

What you're talking about is called EAV model or triple store. Later can be queried with SPARQL

Pierre is right; a triplestore is what you want, and RDF is the standard for that. SPARQL is the standard language for querying it (a lot like SQL for RDBMS's).

Have a look at the databases offered by various Cloud services:
Google AppEngine Datastore
(based on Bigtable)
Amazon SimpleDB
Microsoft SDS
Apache CouchDB
If Cloud databases aren't an option, BerkelyDB could be a good choice.

Related

HBase or Hive - web requests

Are either HBase/Hive suitable replacements as your traditional (non)relational database? Will they be able to serve up web-requests from web clients and respond in a timely manner? Are HBase/Hive only suitable for large dataset analysis? Sorry I'm a noob at this subject. Thanks in advance!
Hive is not at all suitable for any real time need such as timely web responses. You can use HBase though. But don't think about either HBase or Hive as a replacement of traditional RDBMSs. Both were meant to serve different needs. If your data is not huge enough better go with a RDBMS. RDBMSs are still the best choice(if they fit into your requirements). Technically speaking, HBase is really more a DataStore than DataBase because it lacks many of the features you find in an RDBMS, such as typed columns, secondary indexes, triggers, and advanced query languages, etc.
And the most important thing which could struck a newbie is the lack of SQL support by HBase, since it belongs to NoSQL family of stores.
And HBase/Hive are not the only options to handle large datasets. You have several options like Cassandra, Hypertable, MongoDB, Accumulo etc etc. But each one is meant for solving some specific problem. For example, MongoDB is used handling document data. So, you need to analyze your use case first and based on that you have to choose the datastore which suits your requirements.
You might find this list useful which compares different NoSQL datastores.
HTH
Hive is data warehouse tool, and it is mainly used for batch processing.
HBase is NoSQL database which allows random access based on rowkey (primary key). It is used for transactional access. It doesn't have indexing support which could be limitation for your needs.
Thanks,
Dino

What type of NoSQL database is best suited to store hierarchical data?

What type of NoSQL database is best suited to store hierarchical data?
Say for example I want to store posts of a forum with a tree structure:
original post
+ re: original post
+ re: original post
+ re2: original post
+ re3: original post
+ re2: original post
MongoDB and CouchDB offer solutions, but not built in functionality. See this SO question on representing hierarchy in a relational database as most other NoSQL solutions I've seen are similar in this regard; where you have to write your own algorithms for recalculating that information as nodes are added, deleted and moved. Generally speaking you're making a decision between fast read times (e.g. nested set) or fast write times (adjacency list). See aforementioned SO question for more options along these lines - the flat table approach appears most aligned with your question.
One standard that does abstract away these considerations is the Java Content Repository (JCR), both Apache JackRabbit and JBoss eXo are implementations. Note, behind the scenes both are still doing some sort of algorithmic calculations to maintain hierarchy as described above. In addition, the JCR also handles permissions, file storage, and several other aspects - so it may be overkill for your project.
What you possibly need is a document-oriented database like MongoDB or CouchDB.
See examples of different techniques which allow you to store hierarchical data in MongoDB:
http://www.mongodb.org/display/DOCS/Trees+in+MongoDB
The most common one is IBM's IMS.There is also Cache Database
See this question posted on dba section of stackexchange.
Faced with the same issue, I decided to create my own (very simple) solution using Lua + Redis https://github.com/qbolec/Redis-Tree/
Exist-db implemented hierarchical data model for xml persistence
Graph databases would probably also solve this problem. If neo4j is not enough for you in terms of scaling, consider Titan, which is based on various storage back-ends including HBase and should scale very well. It is not as mature as neo4j, but it is a very promising project.
LDAP, obviously. OpenLDAP would make short work of it.
In mathematics, and, more specifically, in graph theory, a tree is an undirected graph in which any two vertices are connected by exactly one path. So any graph db will do the job for sure. BTW an ordinary graph like a tree can be simply mapped to any relational or non-relational DB. To store hierarchical data into a relational db take a look at this awesome presentation by Bill Karwin. There are also ORMs with facilities to store trees. For example TypeORM supports the Adjacency list and Closure table patterns for storing hierarchical structures.
TypeORM is used in TypeScript\Javascript development. Check popular ORMs to find a one supporting trees based on your environment.
The king of Non-relational DBs [IMHO] is Mongodb. Check out it's documentation. to find out how it stores trees. Trees are the most common kind of graphs and they are used everywhere. Any well-established DB solution should have a way to deal with trees.
Here's a non-answer for you. SQLServer 2008!!!! It's great for recursive queries. Or you can go the old fashioned route and store hierarchy data in a separate table to avoid recursion.
I think relational databases lend themselves very well to tree data. Both in query performance and ease of use. With one caveat.... you will be inserting into an indexed table, and probably several other indexed tables every time someone makes a post. Insert performance could be an issue on a facebook caliber forum.
Check out MarkLogic. You can download a demo copy from the website. It is a database for unstructured data and falls under the NoSQL classification of databases. I know unstructured data is a pretty loaded term but just think of it as data that does not fit well in the rows and columns of a RDBMS (like hierarchical data).
Just spent the weekend at a training course using MUMUPS db as a back-end for a full stack javascript browser application development framework. Great stuff! I'd recommend GT.M distro of MUMPS under GPL. Or try http://sourceforge.net/projects/mumps/?source=recommended for vanilla MUMPS. Check out http://robtweed.wordpress.com/ for ewd.js js framework and more info on MUMPS.
A NoSql storage service with native support for hierarchical data is Amazon Web Service's Simple Storage Service (AWS S3). The path based keys are hierarchical by nature, and the blob values may be typed using attributes (mime type, e.g. application/json, text/csv, etc.). Advantages of S3 include the ability to scale to both extremely large overall capacity, versioning, as well as nearly infinite concurrent writes. Disadvantages include no support for conditional writes (optimistic concurrency), or consistent reads (only for read-after write) and no support for references/relationships. It is also purely usage based so wide variations in demand do not require complex scaling infrastructure or over-provisioned capacity.
Clicknouse db has explicit support for hierarchical data

Is there a database like this?

Background: Okay, so I'm looking for what I guess is an object database. However, the (admittedly few) object databases that I've looked at have been simple persistence layers, and not full-blown DBMSs. I don't know if what I'm looking for is even considered an object database, so really any help in pointing me in the right direction would be very appreciated.
I don't want to give you two pages describing what I'm looking for so I'll use an example to illustrate my point. Let's say I have a "BlogPost" object that I need to store. Something like this, in pseudocode:
class BlogPost
title:String
body:String
author:User
tags:List<String>
comments:List<Comment>
(Assume Comment is its own class.)
Now, in a relational database, author would be stored as a foreign key pointing to a User.id, and the tags and comments would be stored as one-to-many or many-to-many relationships using a separate table to store the relationships. What I'd like is a database engine that does the following:
Stores related objects (author, tags, etc.) with a direct reference instead of using foreign keys, which require an additional lookup; in other words, objects on top of each other should be natively supported by the database
Allows me to add a comment or a tag to the blog post without retrieving the entire object, updating it, and then putting it back into the database (like a document-oriented database -- CouchDB being an example)
I guess what I'm looking for is a navigational database, but I don't know. Is there anything even remotely similar to what I'm thinking of? If so, what is it called? (Or better yet, give me an actual working database.) Or am I being too picky?
Edit:
Just to clarify, I am NOT looking for an ORM or an abstraction layer or anything like that. I am looking for an actual database that does this internally. Sorry if I'm being difficult, but I've searched and I couldn't find anything.
Edit:
Also, something for the JVM would be excellent, but at this point I really don't care what platform it runs on.
I think what you are describing could easily be modeled in a graph database. Then you get the benefit of navigating to the nodes/edges where you want to make changes without any need to retrieve anything else. For the JVM there's the Neo4j open source graph database (where I'm part of the team). You can read about it over at High Scalability, as part of an overview at thinkvitamin or in this stackoverflow thread. As for the tags, I think storing them in a graph database can give you some extra advantages if you want to find related tags and similar stuff. Just drop a line on the mailing list, and I'm sure the community will help you out.
You could try out db4o which is available in C# and Java.
I think our looking for this: http://www.odbms.org/. This site has some good info on Object Databases, including Objectivity, which is a pretty good object database.
Elephant does this: http://common-lisp.net/project/elephant/
Exactly what you've described can be done with (N)Hibernate running on an ordinary RDBMS.
The advantage of using such a persistence layer with an ordinary database is that you have a standard database system combined with convenient programming. You declare your classes in a very natural way, and (N)Hibernate provides a way to translate betweeen references/lists and foreign key relationships.
Java tutorial: http://docs.jboss.org/hibernate/stable/core/reference/en/html/tutorial-firstapp.html
.NET tutorial: https://web.archive.org/web/20081212181310/http://blogs.hibernatingrhinos.com/nhibernate/archive/2008/04/01/your-first-nhibernate-based-application.aspx
If you insist that you don't want to use a well-supported standard RDBMS and would rather trust your data to something more exotic and less heavily tested, you're looking for an Object Relational Database.
However, such a product would probably be best implemented by making it be a layer over a standard RDBMS anyway. This is probably why ORMs like (N)Hibernate are the most popular solution - they allow standard RDBMS software (and widely available management/user skills) to be applied, and yet the programming experience is 99% object-based.
This is exactly what LINQ was designed for.
Microsoft LINQ defines a set of proprietary query operators that can be used to query, project and filter data in arrays, enumerable classes, XML (XLINQ), relational database, and third party data sources. While it allows any data source to be queried, it requires that the data be encapsulated as objects. So, if the data source does not natively store data as objects, the data must be mapped to the object domain. Queries written using the query operators are executed either by the LINQ query processing engine or, via an extension mechanism, handed over to LINQ providers which either implement a separate query processing engine or translate to a different format to be executed on a separate data store (such as on a database server as SQL queries (DLINQ)). The results of a query are returned as a collection of in-memory objects that can be enumerated using a standard iterator function such as C#'s foreach.
There's a variety of terms, all linked to Object-Relational Mapping, aka ORM, which is probably going to be the most useful one for you to look up. ORM libraries exist for many programming languages.
Oracle's nested tables provide some part of that functionality, though in updates, you cannot just add a row to the nested table - you have to replace the whole nested table.
I guess you're looking for an ORM with "EntityFirst" approach.
In EntityFirst approach the developer is least[not-at-all] concerned with Database. You just have to build your entities or objects. The ORM then takes care of storing the entities in Database and retrieving them at your will.
The only EntityFirst ORM witihn my knowledge "Signum". It's a wonderful framework built on top of .net. I recommend you to go thrgouh some videos on the SignumFramework website and I'm sure you'll find it useful.
Link Text: http://www.signumframework.com
Thanks.
ZODB perhaps?
good introduction find here:
http://www.ibm.com/developerworks/aix/library/au-zodb/
You could try out STSdb, DB4O, Perst ... which is available in C# and Java.

What exactly is NoSQL?

What exactly is NoSQL? Is it database systems that only work with {key:value} pairs?
As far as I know MemCache is one of such database systems, am I right?
What other popular NoSQL databases are there and where exactly are they useful?
Thanks, Boda Cydo.
I'm not agree with the answers I'm seeing, although it's true that NoSQL solutions tends to break the ACID rules, not all are created from that approach.
I think first you should define what is a SQL Solution and then you can put the "Not Only" in front of it, that will be more accurate definition of what is a NoSQL solution.
With this approach in mind:
SQL databases are a way to group all the data stores that are accessible using Structured Query Language as the main (and most of the time only) way to communicate with them, this means it requires that the database support the structures that are common to those systems like "tables", "columns", "rows", "relationships", etc.
Now, put the "Not Only" in front of the last sentence and you will get a definition of what means "NoSQL". NoSQL groups all the stores created as an attempt to solve problems which cannot fit into the table/column/rows structures or even in SQL Statements, in most of the cases these databases will not support relationships, they're abandoning the well known structures just because the problems have changed since their conception.
If you have a text file, and you create an API to store/retrieve/organize this information, then you have a NoSQL database in your hands.
All of these means that there are several solutions to store the information in a way that traditional SQL systems will not allow to achieve better performance, flexibility, etc etc. Every NoSQL provider tries to solve a different problem and that's why you wont be able to compare two different solutions, for example:
djondb is a document store created to be used as
NoSQL enterprise solution supporting transactions, consistency, etc.
but sacrifice performance of its counterparts.
MongoDB is a document store (similar to
djondb) which accomplish great performance but trades some of the
ACID properties to achieve this.
CouchDB is another document store which
solves the queries slightly different providing views to retrieve the
information without doing a full query every time.
...
As you may have noticed I only talked about the document stores, that's because I wanted to show you that 3 different document stores implementations have different approach, therefore you should keep in mind the golden rule of NoSQL stores "Use the right tool for the right job".
I'm the creator of djondb and I've been doing a lot of research even before trying to start my own NoSQL implementation, but this is a field where the concepts will keep changing the way we see the information storage.
From wikipedia:
NoSQL is an umbrella term for a loosely defined class of non-relational data stores that break with a long history of relational databases and ACID guarantees. Data stores that fall under this term may not require fixed table schemas, and usually avoid join operations. The term was first popularised in early 2009.
The motivation for such an architecture was high scalability, to support sites such as Facebook, advertising.com, etc...
To quickly get a handle on NoSQL systems, see this blog post I wrote: Visual Guide to NoSQL Systems. Essentially, NoSQL systems sacrifice either consistency or availability in favor of tolerance to network partitions.
What is NoSQL ?
NoSQL is the acronym for Not Only SQL. The basic qualities of NoSQL databases are schemaless, distributed and horizontally scalable on commodity hardware. The NoSQL databases offers variety of functions to solve various problems with variety of data types, where “blob” used to be the only data type in RDBMS to store unstructured data.
1 Dynamic Schema
NoSQL databases allows schema to be flexible. New columns can be added anytime. Rows may or may not have values for those columns and no strict enforcement of data types for columns. This flexibility is handy for developers, especially when they expect frequent changes during the course of product life cycle.
2 Variety of Data
NoSQL databases support any type of data. It supports structured, semi-structured and unstructured data to be stored. Its supports logs, images files, videos, graphs, jpegs, JSON, XML to be stored and operated as it is without any pre-processing. So it reduces the need for ETL (Extract – Transform – Load).
3 High Availability Cluster
NoSQL databases support distributed storage using commodity hardware. It also supports high availability by horizontal scalability. This features enables NoSQL databases get the benefit of elastic nature of the Cloud infrastructure services.
4 Open Source
NoSQL databases are open source software. The usage of software is free and most of them are free to use in commercial products. The open sources codebase can be modified to solve the business needs. There are minor variations in the open source software licenses, users must be aware of license agreements.
5 NoSQL – Not Only SQL
NoSQL databases not only depend SQL to retrieve data. They provide rich API interfaces to perform DML and CRUD operations. These are APIs are move developer friendly and supported in variety of programming languages.
Take a look at these:
http://en.wikipedia.org/wiki/Nosql#List_of_NoSQL_open_source_projects
and this:
http://www.mongodb.org/display/DOCS/Comparing+Mongo+DB+and+Couch+DB
I used something called the Raima Data Manager more than a dozen years ago, that qualifies as NoSQL. It calls itself a "Set Oriented Database" Its not based on tables, and there is no query "language", just an C API for asking for subsets.
It's fast and easier to work with in C/C++ and SQL, there's no building up strings to pass to a query interpreter and the data comes back as an enumerable object rather than as an array. variable sized records are normal and don't waste space. I never saw the source code, but there were some hints at the interface that internally, the code used pointers a lot.
I'm not sure that the product I used is even sold anymore, but the company is still around.
MongoDB looks interesting, SourceForge is now using it.
I listened to a podcast with a team member. The idea with NoSQL isn't so much to replace SQL as it is to provide a solution for problems that aren't solved well with traditional RDBMS. As mentioned elsewhere, they are faster and scale better at the cost of reliability and atomicity (different solutions to different degrees). You wouldn't want to use one for a financial system, but a document based system would work great.
Here is a comprehensive list of NoSQL Databases: http://nosql-database.org/.
I'm glad that you have had success with RDM John! I work at Raima so it's great to hear feedback. For those looking for more information, here are a couple of resources:
Video Overview of RDM's General Architecture
Free Evaluation Download of RDM

Database system that is not relational

What are the other types of database systems out there. I've recently came across couchDB that handles data in a non relational way. It got me thinking about what other models are other people is using.
So, I want to know what other types of data model is out there. (I'm not looking for any specifics, just want to look at how other people are handling data storage, my interest are purely academic)
The ones I already know are:
RDBMS (mysql,postgres etc..)
Document based approach (couchDB, lotus notes)
Key/value pair (BerkeleyDB)
db4o
Quote from the "about" page:
db4o is the open source object database that enables Java and .NET developers to store and retrieve any application object with only one line of code, eliminating the need to predefine or maintain a separate, rigid data model.
Older non-relational databases:
Network Database
Hierarchical Database
Both mostly went out of style when relational became feasible.
Column-oriented databases are also a bit of a different animal. Many of them do support standard relational database SQL though. These are generally used for data warehouse type applications.
Semantic Web is also a non-relational data storage paradigm. There are no relations, all metadata is stored in the same way as data, and every entity has potentially its own unique set of attributes. Open-source projects that implement RDF, a Semantic Web standard, include Jena and Sesame.
Isn't Amazon's SimpleDB non-relational?
db4o, as mentioned by Eric, is an Object-Oriented database management system (OODBMS).
There's object-based databases(Gemstore, for example). Google's Big-Table and Amason's Simple Storage I am not sure how you would categorize, but both are map-reduce based.
A non-relational document oriented database we have been looking at is Apache CouchDB.
Apache CouchDB is a distributed, fault-tolerant and schema-free document-oriented database accessible via a RESTful HTTP/JSON API. Among other features, it provides robust, incremental replication with bi-directional conflict detection and resolution, and is queryable and indexable using a table-oriented view engine with JavaScript acting as the default view definition language.
Our interest was in providing a distributed access user preferences store that would be immune to shape changes to which we could serialize preference objects from Java and access those just as easily with Javascript from a XULRunner based client application.
I'd like to detail more on Bill Karwin's answer about semantic web and triplestores, since it's what I am working on at the moment, and I have something to say on it.
The idea behind a triplestore is to store a graph-based database, whose datamodel roots in RDF. With RDF, you describe nodes and associations among nodes (in other words, edges). Data is organized in triples :
start node ----relation----> end node
(in RDF speech: subject --predicate--> object). With this very simple data model, any data network can be represented by adding more and more triples, provided you give a meaning to nodes and relations.
RDF is very general, and it's a graph-based data model well suited for search criteria looking for all triples with a particular combination of subject, predicate, or object, in any combination. Eventually, through a query language called SPARQL, you can also perform more complex queries, an operation that boils down to a graph isomorphism search onto the graph, both in terms of topology and in terms of node-edge meaning (we'll see this in a moment). SPARQL allows you only SELECT (and similar) queries. No DELETE, no INSERT, no UPDATE. The information you query (e.g. specific nodes you are interested in) are mapped into a table, which is what you get as a result of your query.
Now, topology in itself does not mean a lot. For this, a Schema language has been invented. Actually, more than one, and calling them schema languages is, in some cases, very limitative. The most famous and used today are RDF-Schema, OWL (Lite and Full), and they predate from the obsolete DAML+OIL. The point of these languages is, boiling down stuff, to give a meaning to nodes (by granting them a type, also described as a triple) and to relationships (edges). Also, you can define the "range" and "domain" of these relationships, or said differently what type is the start node and what type is the end node: you can say for example, that the property "numberOfWheels" can be applied only to connect a node of type Vehicle to a non-zero integer value.
ns:MyFiat --rdf:type--> ns:Vehicle
ns:MyFiat --ns:numberOfWheels-> 4
Now, you can use these ontologies in two directions: validation and inference. Validation is not that fancy today, but I've seen instances of use. Inference is what is cool today, because it allows reasoning. Inference basically takes a RDF graph containing a set of triples, takes an ontology, mixes them into a triplestore database which contains an "inference engine" and like magic the inference engine invents triples according to your ontological description. Example: suppose you just store this information in the database
ns:MyFiat --ns:numberOfWheels--> 4
and nothing else. No type is specified about this node, but the inference engine will add automatically a triple saying that
ns:MyFiat --rdf:type--> ns:Vehicle
because you said in your ontology that only objects of type Vehicle can be described by a property numberOfWheels.
Conversely, you can use the inference engine to validate your data against the ontology so to refuse not compliant data (sort of like XML-Schema for XML). In this case, you will need both triples to have your data successfully accepted by the triplestore.
Additional characteristics of triplestores are Formulas and Context-aware storage. Formulas are statements (as usual, triples subject predicate object) that describe something hypothetical. I never used Formulas, so I won't go into more details of something I don't know. Context awareness are basically subgraphs: the problem with storing triples is that you don't have anything to say where these triples come from. Suppose you have two dealers that describe the same price of a component. One says that the price is 5.99 and the other 4.99. If you just store both triples into a database, now you don't know anything about who stated each information. There are two ways to solve this problem.
One is reification. Reification means that you store additional triples to describe another triple. It's wasteful, and makes life hell because you have to reify every and each triple you store. The alternative is context-awareness. Having a context-aware storage It's like being able to box a bunch of triples into a container with a label on it (the context identifier). You now can use this identifier as subject for additional statements, hence describing a bunch of triples in a single action.
4. Navigational. Includes Tree/Hierarchy and Graph/Network.
File systems, the semantic web, XML, Object databases, CODASYL, and many others all fit into this category.
Those 4 are pretty much it.
There is also what is referred to as an "inverted index" or "inverted list" database. Software AG's Adabas product would be an example. As with hierachical, these databases continue to be used in large corporate or university environments because of legacy considerations or due to a performance advantage in certain situations (typically high-end transactional applications).
There are BASE systems (Basically Available, Soft State, Eventually consistent) and they work well with simple data models holding vast volumes of data. Google's BigTable, Dojo's Persevere, Amazon's Dynamo, Facebook's Cassandra are some examples.
See LINK
The illuminate Correlation Database is a new revolutionary non-relational database. The Correlation Database Management Dystem (CDBMS) is data model independent and designed to efficiently handle unplanned, ad hoc queries in an analytical system environment. Unlike relational database management systems or column-oriented databases, a correlation database uses a value-based storage (VBS) architecture in which each unique data value is stored only once and an auto-generated indexing system maintains the context for all values (data is 100% indexed). Queries are performed using natural language instead of SQL (NoSQL).
Learn more at: www.datainnovationsgroup.com

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