undefined reference to pthread - c

I want to compile a program which is using threads. I use the #include <pthread.h> library, however when I compile it using my make file I get the following errors:
file.c:(.text+0x378): undefined referece to `pthread_create`
file.c:(.text+0x3ad): undefined referece to `pthread_join`
The program run fine with the normal gcc compilator using -lpthread flag
The source of the make file that I am using:
CC=gcc
COMPILE.c=$(CC) $(CFLAGS) $(CPPFLAGS) -c
LINK.c=$(CC) $(CFLAGS) $(CPPFLAGS) $(LDFLAGS) -lpthread
CFLAGS = -Wall -O -I$(dir $(LIBLAB))
TEMPFILES = core core.* *.o temp.* *.out typescript*
all:
#echo "Please compile directly the intended programs by name"
clean:
rm -f ${TEMPFILES}
I have set the -lpthread flag in the make file but is not working, what changes should I make in the make file?

Your replacement for LINK.c is wrong. You can't add libraries to this because it means they appear on the link line first.
If you'd shown us the output of make, in addition to the makefile, probably we would have seen it more quickly. Libraries like -lpthread must come at the end of the link line, after any objects that might have needed to use the library.
As I mentioned in comments, you should remove the LINK.c setting and add:
CFLAGS = -pthread
and that should be good enough. If you do need to add libraries, you should use LDLIBS like this:
LDLIBS = -lpthread
not replace the LINK.c variable.

Related

Why am I getting this error Makefile: No rule to make target 'timer.c', needed by 'timer.o'. Stop

My working directory looks like this:
main.c
Makefile
my_memmove.h
my_memmove.c
c-timer-lib
timer.c
timer.h
My makefile looks like this:
CC := gcc
CFLAGS := -std=gnu99 -g -Wall -Wextra -Ic-timer-lib
TARGET := output
output: main.o my_memmove.o timer.o
$(CC) $(CFLAGS) main.o my_memmove.o timer.o -o $(TARGET)
main.o: main.c
gcc -c main.c
my_memmove.o: my_memmove.c my_memmove.h
gcc -c my_memmove.c
timer.o: c-timer-lib/timer.c c-timer-lib/timer.h
gcc -c c-timer-lib/timer.c -o $#
clean:
rm *.o $(TARGET)
I don't understand why I keep getting the "Makefile: No rule to make target 'timer.c', needed by 'timer.o'. Stop." error. I believe that it's because the timer.c and timer.h files can't be found.
So much confusion here! :)
First, this is definitely wrong:
$(CC) $(CFLAGS) -I main.o ...
The -I main.o tells the compiler that it should use main.o as the name of a directory to search for include files. That clearly won't work. You should remove the -I here.
On to your problem: you have to realize that there are two completely different programs at play here: make which figures out how to run commands, and the commands that are being run, in this case the compiler gcc.
The -I option is an option to the compiler so that the compiler knows where to look for header files that are included by your source code with #include.
That option means nothing to make; it doesn't understand that option. It's just some text to pass to the compiler. Make is looking for the source file timer.c and it can't find it because you haven't told make where it is.
You have to write your rule to look in the correct place, like this:
timer.o: c-timer-lib/timer.c c-timer-lib/timer.h
gcc -c c-timer-lib/timer.c -o $#
(you should always use -o $# so that your compile line puts the output file where make expects to find it, which will be put into the $# variable by make before it evaluates your recipe.)
ETA
Also, are you sure that -DUNITS="ms" is right? We can't tell without seeing how UNITS is used in the source, but I suspect you probably need an extra level of quotes here, like -DUNITS='"ms"'
Really, you are trying to do too much in this makefile. Make already knows how to correctly build object files from source files. If you don't force the issue by writing your own rules, then make's built-in rules will do the job for you. Your makefile can be written like this:
CC := gcc
CFLAGS := -std=gnu99 -g -Wall -Wextra -Ic-timer-lib -DUNITS='"ms"'
TARGET := output
$(TARGET): main.o my_memmove.o c-timer-lib/timer.o
$(CC) $(CFLAGS) $(LDFLAGS) -o $# $^ $(LDLIBS)
my_memmove.o: my_memmove.h
c-timer-lib/timer.o: c-timer-lib/timer.h
clean:
rm *.o $(TARGET)
make doesn't know which headers your source requires so you have to add the prerequisites by hand, although you can add extra rules to allow it to figure that out for itself.

compile multiple cuda files (that have dynamic parallelism) and MPI code

I have a bunch of .cu files that use dynamic parallelism (a.cu, b.cu, c.cu.., e.cu, f.cu), and a main.c file that uses MPI to call functions from a.cu on multiple nodes. I'm trying to write a make file to compile the executable, but I keep facing the following errors:
cudafiles.o: In function `__cudaRegisterLinkedBinary_66_tmpxft_00001a84_00000000_17_cuda_device_runtime_compute_61_cpp1_ii_8b1a5d37':
link.stub:(.text+0x1fb): undefined reference to `__fatbinwrap_66_tmpxft_00001a84_00000000_17_cuda_device_runtime_compute_61_cpp1_ii_8b1a5d37'
Here is my makefile:
INCFILES=-I/usr/local/cuda-8.0/include -I/opt/mpi/mvapich2-gnu/2.2/include -I./
LIBFILES=-L/usr/local/cuda-8.0/lib64 -L/opt/mpi/mvapich2-gnu/2.2/lib
LIBS=-lcudart -lcudadevrt -lcublas_device -lmpi
ARCH=-gencode arch=compute_60,code=sm_60
NVCC=nvcc -ccbin g++
default: all
all: clean final.o
io.o: io.cpp
g++ -c -std=c++11 io.cpp
final.o: io.o a.cu b.cu c.cu d.cu e.cu f.cu main.cpp
$(NVCC) -std=c++11 $(INCFILES) $(LIBFILES) $(LIBS) -g -G -Xptxas -v -dc $(ARCH) a.cu b.cu c.cu d.cu e.cu f.cu
$(NVCC) -std=c++11 $(ARCH) $(INCFILES) $(LIBFILES) $(LIBS) -rdc=true -dlink a.o b.o c.o d.o e.o f.o io.o -o cudafiles.o
mpicxx -O3 $(INCFILES) $(LIBFILES) -c main.cpp -o main.o
mpicxx $(INCFILES) $(LIBFILES) $(LIBS) cudafiles.o a.o b.o c.o d.o e.o f.o io.o main.o -o exec
clean:
rm -rf *.o exec
The original problem reported was an undefined reference to main. This was arising from this line in the Makefile:
$(NVCC) -std=c++11 $(ARCH) $(INCFILES) $(LIBFILES) $(LIBS) -rdc=true a.o b.o c.o d.o e.o f.o io.o -o cudafiles.o
As constructed, this actually instructs nvcc to perform full/final linking. However the intent of this line was to perform the device-link step only, required when compiling with -rdc=true or -dc, and when not performing the final link with nvcc. In this case, the final link was being performed by mpicc/mpicxx. To perform the device-link step only, we need to specify -dlink. Without that switch, nvcc expects to do final linking, but fails because none of the supplied objects contain a main function. The correct solution, since we have no intent to do final link at this point, is to use the -dlink switch.
I also suggested converting everything to C++ style linking, since nvcc links that way. It might be possible to sort out a C-style link with a C++-style link, but this just seems troublesome to me. Therefore I suggested converting the only .c file (main.c) to a .cpp file, and convert from mpicc to mpicxx
The next problem that arose was undefined references to e.g. cudaSetDevice() and cudaFree(). These are part of the CUDA runtime API library ("libcudart"). When performing final link with nvcc, these are linked automatically. But since final link is being performed by mpicxx (basically a wrapper on g++), it's necessary to call out the link against that library specifically with -lcudart.
Finally, the remaining problem was a link-order problem. In a nutshell, link dependencies need to be satisfied from left to right in the linker command line. Different compilers are more or less picky about this. The final reordering changes were to specify the libraries to link against in the correct order, and also to specify these libraries at the end of the link command line, so that any dependencies on these libraries, to their left in the link command line, are satisfied.

Compiling multiple C and header files with 1 main

[Files in my directory][1]
Need help compiling in a make file.
So I have this link list assignment i'm doing and the directions were.
stringlist.h is supposed to contain the node and the function prototypes
stringlist.c is supposed to have the functions completed that are defined in stringlist.h. BUT stringlist.c is not supposed to contain main at all. Then, namelist.c is supposed to contain main and just have the I/O and its just supposed to call the command functions that are in stringlist.c.
So to compile this we are supposed to create a make file. Whenever I try to I get an error because main doesn't exit in one of the c files. Throughout the term we compiled code like this "gcc -std=gnu99 -m32 -Wall -g -o file file.c"
But it doesn't work.
How would I create the make file? Been spending hours and can't figure it out.
As stated by Jonathan Leffler, the sample Makefile I provided had a few bad ideas. Here's an improvement:
# compiler:
CC = gcc
# compiler flags:
CFLAGS = -g -Wall
# the build target executable:
TARGET = executable
# object files to build:
OBJ = namelist.o stringlist.o
all: $(TARGET)
$(TARGET): $(OBJ)
$(CC) $(CFLAGS) -o $(TARGET) $(OBJ)
Try this:
OBJ := namelist.c stringlist.c
GCC := gcc -g
CFLAGS := -std=gnu99 -m32 -Wall
compile: $(OBJ)
$(GCC) $(CFLAGS) $(OBJ) -o executable

GCC exiting with an error 1 even with -Wall. No explanation why?

So I tried to recompile one of my projects from a few weeks ago and to my surprise I keep receiving an error one on it. I used MinGW to compile it originally and Eclipse CDT. I have -Wall flag enabled on GCC so I assumed if it was a problem with the code I would have a more useful information than a make error 1 being thrown. As such, I suspect that the issue could lie in how I formatted the make file. Luckily, I did compile the project when I push the commits last time and the binaries are still in the repo. Nevertheless, I would appreciate some help so that I can continue to improve
the project.
Edit: when I do -all, it just refuses to compile.
Here is the makefile. I hope it is a simple as me following some incorrect syntax:
CC=gcc -I../Include -L..\Lib
override CFLAGS+=-Wall -O3 #$(shell pkg-config --cflags fftw3)
#override LDFLAGS+=#$(shell pkg-config --libs fftw3 glib-2.0) -lm
.PHONY: all clean
all: lvdoenc lvdodec
lvdoenc: lvdoenc.o lvdomain.o
$(CC) $(CFLAGS) -o $# $^ $(LDFLAGS) -I../Include -L../Lib -lfftw3
lvdodec: lvdodec.o lvdomain.o
$(CC) $(CFLAGS) -o $# $^ $(LDFLAGS) -I../Include -L../Lib -lfftw3
%.o: %.c
$(CC) -c $(CFLAGS) -o $# $^
lvdoenc.c: lvdocommon.h
lvdodec.c: lvdocommon.h
clean:
rm -f lvdoenc lvdodec lvdomain.o lvdoenc.o lvdodec.o
Here is a link to my repo:
https://github.com/Skylion007/LVDOWin
Update: Using some of the answers I have confirmed that it is GCC that is exiting with an error 1 and I cannot figure out why.
Update2: It's not printing anything to syserr.
Without a transcript of make's output, when you run it, I can't see why GCC should fail silently, but I can see at least two problems with your makefile:
Since you state that you are using MinGW, your target platform must be MS-Windows, on which executable files should be qualified by a .exe extension; thus, your all: lvdoenc lvdodec rule is malformed; it should, at the very least be all: lvdoenc.exe lvdodec.exe[1], (or better, for portability all: lvdoenc$(EXEEXT) lvdodec$(EXEEXT), where you define EXEEXT = .exe for Windows, and leave EXEEXT undefined, or defined to be nothing, for platforms which don't require the extension).
Your two rules lvdoenc.c: lvdocommon.h and lvdodec.c: lvdocommon.h are obviously incorrect; the .c files don't depend on the .h, but their respective .o files do. Thus, these two rules should be lvdoenc.o: lvdocommon.h and lvdodec.o: lvdocommon.h respectively.
[1] Of course, you then also need to correctly refer to these two "goals" respectively, as lvdoenc.exe and lvdodec.exe, (or lvdoenc$(EXEEXT) and lvdodec$(EXEEXT)), consistently, throughout the makefile.
There are a few other constructs, within your makefile, which I consider questionable: CC shouldn't really be defined, with the -I../Include or -L..\Lib, (and why inconsistently / in the former, but \ in the latter? Both should be /). Conventionally, -I ... belongs in CPPFLAGS, and -L ... in LDFLAGS, with both CFLAGS and CPPFLAGS passed to the compiler, and normally all of CFLAGS, CPPFLAGS, and LDFLAGS passed to the compiler driver, when invoking the linker, (although, as others have noted in comments, the -I ... settings are strictly necessary when compiling .c to .o, while the -L ... settings are required only in the linking phase).
the following makefile is more in line with what you need for your project.
However, it does not use:
#$(shell pkg-config --libs fftw3 glib-2.0)
which you will need to re-add.
notice the usage of ':=' when defining macros, so the macro only needs to be evaluated once, rather than every time it is referenced.
the paths for the SHELL macro and the CC macro may need to be modified for your system.
SHELL := /usr/bin/sh
CC := /usr/bin/gcc
#CFLAGS := -c -Wall -Wextra -pedantic -std=c99 -O3 #$(shell pkg-config --cflags fftw3)
CFLAGS := -c -Wall -Wextra -pedantic -std=c99 -O3
# override LDFLAGS+=#$(shell pkg-config --libs fftw3 glib-2.0) -lm
LDFLAGS :=
SRCS := $(wildcard *.c)
ENCOBJS := lvdoenc.o lvdomain.o
DECOBJS := lvdodec.o lvdomain.o
.PHONY: all clean
all: lvdoenc lvdodec
lvdoenc: $(ENCOBJS)
$(CC) $(LDFLAGS) -o $# $(ENCOBJS) -L../Lib -lfftw3 -lm
lvdodec: $(DECOBJS)
$(CC) $(LDFLAGS) -o $# $(DECOBJS) -L../Lib -lfftw3 -lm
%.o:%.c lvdocommon.h
$(CC) -c $(CFLAGS) -c $< -o $# -I../Include
clean:
rm -f lvdoenc lvdodec lvdomain.o lvdoenc.o lvdodec.o
Apparently, all that was the cause was that I had uninstalled the 64bit version of MinGW and tried to switch to the 32bit version of MinGW. Unfortunately, some of the libraries would not compile in the 32bit version so I just used MinGW-w instead to solve this problem. It turns out GCC was not starting due to a linker error, but this error was not proportionating and could not be discovered until I tried to run it from the Windows terminal. I am still in the process of solving it and will update this answer when I have fully solved the issue.
Had the same problem while tried to compile my project with make from MSys. Accidentally problem had been solved, after I added a quotes to gcc input and output files in the makefile. I don't know how it works, but hope that it will help someone else.
So in the TS example code should look like this
%.o: %.c
$(CC) -c $(CFLAGS) -o "$#" "$^"
PS: had no problems with building project from ubuntu terminal though, so maybe it's just a msys problem.

Makefile -std=c99 error

all: matrices.c calculations.o
gcc -std=c99 matrices.c calculations.o -o -lm PROGRAM2_EXE
lib: matrices.h calculations.c
gcc -c -std=c99 calculations.c -o calculations.o
clean:
rm matrices.o calculations.o PROGRAM2_EXE
This is my makefile for my project. Inside my matrices and my calculations.c there are multiple for loops. The error it gives me is error: 'for' loop initial declarations are only allowed in c99 mode but i have my -std=c99 in my file. My questions is
How do i fix my makefile to run with the for loops?
This action:
gcc -std=c99 matrices.c calculations.o -o -lm PROGRAM2_EXE
is telling gcc to produce an executable called -lm, which is probably not what you want.
Since you have no rule to produce connections.o, make will use its default rule to build it from connections.c, which is likely something like (from gmake):
%.o: %.c
$(CC) $(CFLAGS) $(CPPFLAGS) $(TARGET_ARCH) -c -o $# $<
Since you don't set -std=c99 in CFGLAGS or CPPFLAGS, it won't be used.
You don't have a rule for calculations.o. That means that the makefile does not specify how to generate calculations.o. You only have a rule for generating all and lib.
Gmake has some default rules. One of them is that if you do not have a rule for filename.o then it is compiled using $(CC) $(CPPFLAGS) $(CFLAGS) -c filename.c.
Your make all line is:
all: matrices.c calculations.o
When you issue make or make all, gmake checks the dependencies first. matrices.c already exists so that's fine. But if calculations.o does not exist, then it decides it needs to build calculations.o. You didn't specify a rule for calculations.o, so the implicit rule is used, which doesn't have -std=c99 in it.
Note that your lib rule is badly written. All rules should either create a file of the corresponding name, or be declared as .PHONY. It seems as if you think that make should somehow deduce that it needs to do make lib if the calculations.o file does not exist, but that isn't how make works.
To fix your problem , just change lib: to calculations.o:. Also, it would be good style to fix the all line. The rule does not make all, it makes PROGRAM2_EXE, so:
.PHONY: all
all: PROGRAM2_EXE
PROGRAM2_EXE: matrices.c calculations.o
gcc -std=c99 matrices.c calculations.o -o PROGRAM2_EXE -lm
(Edit: as Chris Dodd points out, the -o switch must be immediately followed by the filename)
It would be better style to have a rule matrices.o that compiles matrices.c, and then a rule PROGRAM2_EXE: matrices.o calculations.o that links the two.
I use the following CFLAGS:
CFLAGS = -Wall -g -std=c99
It works very good for me.

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