Bluetooth gatt connection global variable not changing - c

Question

I have an issue of an if statement not passing whilst my system gatt connection is not made.
Context
I have a BLE system using a NRF52840-dk board programmed in C. I also have a mobile application which, communicates with this board via a Gatt connection. I have a single service with a single characteristic. I write to this characteristic from my mobile application and, from this do some processing. At the moment I can send over a timestamp and begin storing data. However, I need to then send data back to my mobile device by this connection.
So what I have is a command to be sent from the phone to ask for some data. This should then send data back to the phone by changing the characteristic value.
Before I can change the value I need to see if the command has been issued. However, due to the priorities and constraints of the device I need to do this processing in the main function not in the BLE interrupt that I have done my time stamping in. This is due to the data I will be transmitting eventually will be large.
My issue however is, I receive the command to send some data back to the phone and update a global int value (changed from 0 to 1). Then in my main loop test this value and, if it is 1 write to the terminal and change the value back. I would then use this point of the code to run a function to send the data.
But this statement does not pass.
This is my main loop code
if(GATT_CONNECTED == false)//This works!
{
//Do some functions here
}
else if (GATT_CONNECTED == true)// GATT_CONNECTED = true
{
NRF_LOG_INFO("Test1 passed");//Testing variable this does not print
if(main_test == 1)
{
NRF_LOG_INFO("Test2 passed");//This does not print either irrelevant of value
main_test = 0;//False
}
idle_state_handle();
}
I don't know if the issue is the way I have defined my variable or due to interrupt priorities or something like that. But, when my Gatt connection is made the loop of (GATT_CONNECTED == true) does not seem to process.
My variable is defined in another file where my GATT connection is handled. The GATT connected variable is handled in main. my main_test variable is defined in another c file as int main_test = 0;. In the header declared as extern int main_test;.
I know the GATT_CONNECTED variable works as I have code in it that only runs when my gatt is not connected. I have omitted it for simplicity.
Any ideas,
Thanks
Ps Hope you are all keeping well and, safe
Edit
Added code for simplicity
main.c
bool GATT_CONNECTED = false;
int main(void)
{
Init_Routine();
while(1)
{
Process_data();//This runs if the gatt is not connected if statement inside
if(GATT_CONNECTED == true)//This does not run true when the gatt is connected
{
NRF_LOG_INFO("check gatt connectedpassed");//Testing variable.
nrf_gpio_pin_set(LED_4);//Turn an LED on once led 4 does not work
}
idle_state_handle();
}
}