I am trying to use the amazon sagemaker lab environment and the package libXrender is not installed.
sudo privileges are removed and it's not possible to install it with:
apt-get install libxrender1
Is there an easy fix or do I have to contact their support to install the package in their docker container?
Thanks in advance!
Error results from this piece of code:
from rdkit.Chem.Draw import rdMolDraw2D
from rdkit.Chem.Draw.rdMolDraw2D import *
ImportError: libXrender.so.1: cannot open shared object file: No such file or directory
No problem in installing rdkit. The problem crops up when trying to call one of its visualisation functions rdkit.Chem.Draw.rdMolDraw2D - MolDraw2D requires the help of a rendering library to display the molecules in 2D.
Yes, sudo privileges are not available in Studio Lab. Your best bet is to find a different library that you can install without sudo privileges.
You can also try - conda install -c conda-forge rdki
If you want to use rdkit, we can install it by conda install -c conda-forge rdkit in Studio Lab.
When I ran the unetStack package in ubuntu18.04, an error was occurred. The error information is "Native library yoda_phy_pa_amd64 not found".
I have install the java environment correctly. And I saw the lib related to yoda_phy_pa_amd64 in unet3.0.0/lib dir named with libyoda_phy_pa_amd64.so. I copy the file to usr/lib and usr/local/lib, it still not works and show the same error information "Native library yoda_phy_pa_amd64 not found".
Install java environment, sudo apt-get install openjdk-8-jre
Obtain the authority of the dir, sudo chmod 777 -R unet-3.0.0
Run the audio demo, bin/unet audio
I expect the audio demo will be work, and show the GUI in the browser. I have successfully run the demo in another computer with ubuntu16.04. But I don't know why it does not works.
This is probably because of a missing dependency for the native library that is used for UnetAudio. UnetAudio requires portaudio as a dependency.
You will need to install portaudio separately using sudo apt-get install portaudio-dev on Ubuntu or using MacPorts or Homebrew on macOS.
This package worked for me!
sudo apt-get install portaudio19-dev python-pyaudio
I'm writing a paper in RMarkdown and for better reproducibility, I want to containerize all required software in a singularity container. Unfortunately, when I try to install TinyTeX (which is recommended for Rmarkdown and I would prefer over TeXLive to not inflate the container more than needed), it fails with the following error message (the full build log is pasted here):
Can't locate TeXLive/TLConfig.pm in #INC (you may need to install the TeXLive::TLConfig module) (#INC contains: /~/.TinyTeX/texmf-dist/scripts/texlive /~/.TinyTeX/tlpkg /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.26.1 /usr/local/share/perl/5.26.1 /usr/lib/x86_64-linux-gnu/perl5/5.26 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.26 /usr/share/perl/5.26 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at ~/.TinyTeX/bin/x86_64-linux/tlmgr line 100.
BEGIN failed--compilation aborted at ~/.TinyTeX/bin/x86_64-linux/tlmgr line 100.
This is the build definition file, basically it uses a very slimmed down ubuntu 18.04 and then executes the %post section to install software
BootStrap: library
From: ubuntu:18.04
%post
# Add universe repository
echo "deb http://us.archive.ubuntu.com/ubuntu bionic universe" >> /etc/apt/sources.list
apt -y update
# Install utilites
apt install -y wget
# Install R
apt install -y r-base-core
## Install RMarkdown and TinyTeX
R --slave -e 'install.packages(c("rmarkdown","tinytex")); tinytex::install_tinytex()'
# Clean
apt-get clean
%environment
export LC_ALL="en_US.UTF-8"
%labels
Author DP
I have also tried tinytex::install_tinytex(dir="/opt/tinytex") but that didn't seem to change anything. Does anyone have an idea what's wrong?
That error message is complaining that your image (or, more likely, your path) is missing the TeXLive::TLConfig perl module.
My guess is that the path contents are not being rehashed with the installed modules after the install. The simplest solution is to break it into two commands:
R --slave -e 'install.packages(c("rmarkdown","tinytex"))'
R --slave -e 'tinytex::install_tinytex()'
Installation succeeds when I try that locally.
A potentially useful alternative, if the image is just for document generation, could be converting a docker image with rmarkdown and tex (e.g. https://hub.docker.com/r/rocker/verse) to a singularity one.
With singularity pull docker://rocker/verse you can do that for the latest version, or for a specific version with verse:version_number.
I wrote so many thing in requirements.txt and reinstalled but it didn't work out. I installed odoo 9.0 source code for windows. The command prompt is showing error:
from pychart import *
What do I need to write in requirements.txt for pychart?
As i just ran into the same problem unrelated to odoo.
The following command solved it for me:
pip install Python-Chart
To install the python packages for odoo you can use below command found from this detailed odoo install guide
cd /tmp && wget https://raw.githubusercontent.com/odoo/odoo/9.0/requirements.txt && sudo pip install -r requirements.txt
It will install all the python dependacy in just one command.
Hope this helps.
You have to install that package before you use that, If are on ubuntu command is pip install pychart and if you are on windows the command is c:\Python27\Scripts\pip.exe install pychart.I assume you have installed python on default folder c drive.
Why don't you create a module like install_module and on depends you can add required list of module to install. If you install that module it'll automatically install all depended module. I'm using this same. Instead of command prompt it'll be quite easy too. You can view the depends module list in Technical Data of that install_modules.
I Hope it'll be helpful.
Using the CakePHP docs, I am trying to install 3.0-beta2 using composer but I got this error:
cakephp/cakephp 3.0.x-dev requires ext-intl * -> the requested PHP extension intl is missing from your system
However, I know for sure that intl is installed (it shows on phpinfo). I'm using PHP 5.4.33/Apache 2.4.10.1
I faced the same problem today. You need to enable the intl PHP extension in your PHP configuration (.ini).
Solution Xampp (Windows)
Open /xampp/php/php.ini
Change ;extension=php_intl.dll to extension=php_intl.dll (remove the semicolon)
Copy all the /xampp/php/ic*.dll files to /xampp/apache/bin
Restart apache in the Xampp control panel
Solution Linux (thanks to Annamalai Somasundaram)
Install the php5-intl extension sudo apt-get install php5-intl
1.1. Alternatively use sudo yum install php5-intl if you are on CentOS or Fedora.
Restart apache sudo service apache2 restart
Solution Mac/OSX (homebrew) (thanks to deizel)
Install the php5-intl extension brew install php56-intl
If you get No available formula for php56-intl follow these instructions.
Restart apache sudo apachectl restart
Eventually you can run composer install to check if it's working. It will give an error if it's not.
I faced the same issue in ubuntu 12.04
Installed: sudo apt-get install php5-intl
Restarted the Apache: sudo service apache2 restart
OS X Homebrew (May 2015):
The intl extension has been removed from the main php5x formulas, so you no longer compile with the --enable-intl flag.
If you can't find the new package:
$ brew install php56-intl
Error: No available formula for php56-intl
Follow these instructions: https://github.com/Homebrew/homebrew-php/issues/1701
$ brew install php56-intl
==> Installing php56-intl from homebrew/homebrew-php
When using MAMP
1 Go to terminal
vim ~/.bash_profile
i
export PATH=/Applications/MAMP/bin/php/php5.6.2/bin:$PATH
Change php5.6.2 to the php version you use with MAMP
Hit ESC,
Type :wq,
hit Enter
source ~/.bash_profile
which php
2 Install Mac Ports
https://www.macports.org/install.php
sudo port install php5-intl OR sudo port install php53-intl
cp /opt/local/lib/php/extensions/no-debug-non-zts-20090626/intl.so /Applications/MAMP/bin/php5.3/lib/php/extensions/no-debug-non-zts-20090626/
{take a good look at the folder names that u use the right ones}
3 Add extension
Now, add the extension to your php.ini file:
extension=intl.so
Usefull Link:
https://gist.github.com/irazasyed/5987693
The error message clearly states what the problem is. You need the intl extension installed.
Step 1: install PHP intl you comfortable version
$sudo apt-get install php-intl
step 2:
For XAMPP Server intl extension is already installed, you need to enable this extension to uncomment below the line in your php.ini file. Php.ini file is located at c:\xampp\php\php.ini or where you have installed XAMPP.
Before uncomment:
;extension=php_intl.dll ;extension=php_mbstring.dll
After uncommenting:
extension=php_intl.dll extension=php_mbstring.dll
Short answer: activate intl extension in php_cli.ini. Thanks to #ndm for his input.
If you are using latest version Ubuntu 16.04 or later just do
sudo apt-get install php-intl
Then restart your apache
sudo service apache2 restart
In my case I was not actually trying to run cakephp locally, I was just trying to get it to auto update locally using composer (because I am playing with writing plugins that you install with composer). Since I don't actually even run it locally I could simply ignore requirements by adding the --ignore-platform-reqs flag.
php composer.phar update --ignore-platform-reqs
In my case, my running php version is 7.1.x on mac OSX .
I installed intl command using brew install php71-intl.
Placing extension=intl.so inside php.ini was no effect at all. Finally i looked for extension installed directory and there i saw intl.so and placed that path (extension=/usr/local/Cellar/php71-intl/7.1.11_20/intl.so) to my php.ini file and it solved my problem.
In my case (xampp PHP 8.0)
Find ;extension=intl in /xampp/php/php.ini
Remove ; and Restart Apache
MAKE this
In XAMPP, intl extension is included but you have to uncomment extension=php_intl.dll in php.ini and restart the server through the XAMPP Control Panel.
In WAMP, the intl extension is “activated” by default but not working. To make it work you have to go to php folder (by default) C:\wamp\bin\php\php{version}, copy all the files that looks like icu*.dll and paste them into the apache bin directory C:\wamp\bin\apache\apache{version}\bin. Then restart all services and it should be OK.
if you use XAMPP do this
1. turn off XAMPP
2. Modifed the php.ini is located in c/:xampp/php/php.ini
3. intl extension is included but you have to uncomment extension=php_intl.dll in php.ini and restart the server through the XAMPP Control Panel.
For Ubuntu terminal:
Please follow the steps:
Step-1:
cd ~
Step -2: Run the following commands
sudo apt-get install php5-intl
Step -3: You then need to restart Apache
sudo service apache2 restart
For Windows(XAMPP) :
Find the Php.ini file:
/xampp/php/php.ini
Update the php.ini file with remove (;) semi colon like mentioned below:
;extension=php_intl.dll to extension=php_intl.dll
and save the php.ini file.
After that you need to
Restart the xampp using xampp control.
Intl Means :Internationalization extension which enables programmers to perform UCA-conformant collation and number,currency,date,time formatting in PHP scripts.
To enable PHP Intl with PECL can be used.
pecl install intl
On a plain RHEL/CentOS/Fedora, PHP Intl can be install using yum
yum install php-intl
On Ubuntu, PHP Intl can be install using apt-get
apt-get install php5-intl
Restart Apache service for the changes to take effect.
That's it
For those who get Package not found error try sudo apt-get install php7-intl then run composer install in your project directory.
I had the same problem in windows
The error was that I had installed several versions of PHP and the Environment Variables were routing to wrong Path of php see image example
I'm using Mac OS High Sierra and none of these worked for me. But after searching a lot I found one that worked!
This may seem trivial, but in fact about 2 months ago some clever guys made changes in brew repository, so doing just: brew install php71-intl will show you error with message that such recipe doesn’t exists.
Fortunately, there is. There is temporary fix in another brew repo, so all you have to do is:
brew tap kyslik/homebrew-php
brew install kyslik/php/php71-intl
SOURCE: http://blastar.biz/2018/04/14/how-to-enable-php-intl-extension-for-php-7-1-using-xampp-on-macos-high-sierra/
I use Linux Ubuntu 20, you can try this:
Check php installed modules:
php -m | grep intl
If there are no result(s) from this command, you should just go ahead and install the module:
sudo apt-get install php7.4-intl
you will need to change *php7.4 to your desired php version.
you should restart apache when you're done:
sudo service apache2 restart