I am trying to compare data ingested into both Accumulo and Solr from the same source XML. The data ingested into Accumulo is legacy code while Solr is new code. I can easily extract out data from Solr using SolrCloud and choosing CSV or JSON, which is easily readable. But I'm at a loss for how to easily view the data in Accumulo. I used scan to view the data, but it is not easily readable. Is there a way to export the data in Accumulo to a CSV or something similar so it will be easy to read/compare with other datasets?
As I understand it, Apache Solr is a document store which uses Lucene indexes to make search fast via a web-based REST interface. On the other hand, Apache Accumulo is a massively scalable sorted key-value store, which stores arbitrary key-value pairs with cell-level security labels, in accordance with the user's application, queryable with a Java API. It makes no sense to compare the two. They are entirely different applications. Accumulo is a low-level infrastructure application, upon which you can build complex systems, such as a search engine comparable to Solr, but it is not directly comparable to Solr because Accumulo is not a search engine.
To answer your question about how to view data in Accumulo, the answer is to use its Java API. I recommend starting with the Tour on its web page, for some examples of how to query it. As for how the data is presented, and in what form, that depends on the application which ingested it in the first place. It can be arbitrary binary data in byte arrays and may not be directly viewable; that depends on the application. Accumulo is agnostic to the nature of the data stored in its key-value pairs.
What you were probably referring to in your question, when you said "I used scan to view the data", you were probably referring to the scan command in Accumulo's shell. You should probably be aware that the shell is not the primary interface for query. It is intended for system administration and triage of data ingest. The Java API is the primary means of querying.
The Accumulo open source community is pretty responsive to questions. If you're having trouble figuring out how best to use it for your needs, I would advise to ask on their community mailing lists, which can be found at their website. StackOverflow is more suitable for very specific questions than generalized "getting started" kinds of tutorials.
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I am looking into Neo4j as a stripped-down document store. A key aspect of document storage is search, and I know Neo4j includes full text search via legacy indices provided by Lucene.
I would be very interested in hearing the limitations of Neo4j search capabilities in a distributed environment. Does it provide a distributed index? In what ways is it inferior to Solr or ElasticSearch? How far can I take it before I must install Solr?
-- EDIT --
We are trying to integrate two distinct search efforts. The first is standard text content search. For instance, using the Enron emails, we want to search for every email that matches "bananas" or "going to the store" and get those document bodies in response. This is where people often turn to Solr.
The second case is more complicated, we have attached a great deal of meta-data to each document. We may have decided that "these" emails were the result of late-night drunk-dialing. Now I want to search for all emails that may have been the result of late-night drunk-dialing. For this kind of meta-data, we believe a graph database is in order.
In a perfect world, I can use one platform to perform both queries. I appreciate that Neo4j (nor OrientDB, Arango, etc) are designed as full text search databases, but I'm trying to understand the limitations thereof.
In terms of volume, we are dealing at a very large scale with batch-style nightly updates. The data is content heavy, with some documents running into hundreds of pages of text, but mostly on the order of a page or two.
I once worked on a health social network where we needed some sort of search and connection search functionalities we first went on neo4j we were very impressed by the cypher query language we could get and express any request however when you throw there billion of nodes you start to pay the price and we started considering another graph db, this time we've made a lot of research, tests and OrientDB was clearly the winner, OrientDB is highly scalable but the thing is that you have to code by yourself, your "search algorithm" if you want to do some advanced things (what is the common point between this two nodes) otherwise you have the SQL like query language (i don't know/remember if he has a name) but you can do some interesting stuff with it
So in conclusion i would definitely go on OrientDB
Neo4j can provide a "distributed index" in the sense that the high availability cluster can make your index available on more than one machine, but I'm pretty sure that's not what you're after. Related to this issue is a different answer I wrote about graph partitioning, and what it takes to distribute a really large number of nodes/relationships across multiple machines. (It's not terribly simple)
Solr and Lucene do two different things (although Solr is built on top of Lucene). I think solr and neo4j are not comparable because they're trying to do completely different things. This site isn't about software recommendations so I can't tell you what you should use other than to say you should read up on solr and neo4j, and figure out which set of functionality you want. As far as I know, this is an exclusive decision as I'm not aware of people integrating solr with neo4j.
Your question is very difficult to answer, I'd recommend expanding on what you are trying to do and what you have tried, you'll probably get better responses.
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Let us consider the following problem. We have a system containing a huge amount of data (Big-Data). So, in fact we have a data base. As the first requirement we want to be able to write to and to read from the data base quickly. We also want to have a web-interface to the data-bases (so that different clients can write to and read from the data base remotely).
But the system that we want to have should be more than a data base. First, we want to be able to run different data-analysis algorithm on the data to find regularities, correlations, abnormalities and so on (as before we do care a lot about the performance). Second, we want to bind a machine learning machinery to the data-base. Which means that we want to run machine learning algorithms on the data to be able to learn "relations" present on the data and based on that predict the values of entries that are not yet in the data base.
Finally, we want to have a nice clicks based interface that visualize the data. So that the users can see the data in form of nice graphics, graphs and other interactive visualisation objects.
What are the standard and widely recognised approaches to the above described problem. What programming languages have to be used to deal with the described problems?
I will approach your question like this: I assume you are firmly interested in big data database use already and have a real need for one, so instead of repeating textbooks upon textbooks of information about them, I will highlight some that meet your 5 requirements - mainly Cassandra and Hadoop.
1) The first requirement we want to be able to write to and to read from the database quickly.
You'll want to explore NoSQL databases which are often used for storing “unstructured” Big Data. Some open-source databases include Hadoop and Cassandra. Regarding the Cassandra,
Facebook needed something fast and cheap to handle the billions of status updates, so it started this project and eventually moved it to Apache where it's found plenty of support in many communities (ref).
References:
Big Data and NoSQL: Five Key Insights
NoSQL standouts: New databases for new applications
Big data woes: Which database should I use?
Cassandra and Spark: A match made in big data heaven
List of NoSQL databases (currently 150)
2) We also want to have a web interface to the database
See the list of 150 NoSQL databases to see all the various interfaces available, including web interfaces.
Cassandra has a cluster admin, a web-based environment, a web-admin based on AngularJS, and even GUI clients.
References:
150 NoSQL databases
Cassandra Web
Cassandra Cluster Admin
3) We want to be able to run different data-analysis algorithm on the data
Cassandra, Hive, and Hadoop are well-suited for data analytics. For example, eBay uses Cassandra for managing time-series data.
References:
Cassandra, Hive, and Hadoop: How We Picked Our Analytics Stack
Cassandra at eBay - Cassandra Summit
An Introduction to Real-Time Analytics with Cassandra and Hadoop
4) We want to run machine learning algorithms on the data to be able to learn "relations"
Again, Cassandra and Hadoop are well-suited. Regarding Apache Spark + Cassandra,
Spark was developed in 2009 at UC Berkeley AMPLab, open sourced in
2010, and became a top-level Apache project in February, 2014. It has
since become one of the largest open source communities in big data, with over 200 contributors in 50+ organizations (ref).
Regarding Hadoop,
With the rapid adoption of Apache Hadoop, enterprises use machine learning as a key technology to extract tangible business value from their massive data assets.
References:
Getting Started with Apache Spark and Cassandra
What is Apache Mahout?
Data Science with Apache Hadoop: Predicting Airline Delays
5) Finally, we want to have a nice clicks-based interface that visualize the data.
Visualization tools (paid) that work with the above databases include Pentaho, JasperReports, and Datameer Analytics Solutions. Alternatively, there are several open-source interactive visualization tools such as D3 and Dygraphs (for big data sets).
References:
Data Science Central - Resources
Big Data Visualization
Start looking at:
what kind of data you want to store in the Database?
what kind of relationship between data you got?
how this data will be accessed? (for instance you need to access a certain set of data quite often)
are they documents? text? something else?
Once you got an answer for all those questions, you can start looking at which NoSQL Database you could use that would give you the best results for your needs.
You can choose between 4 different types: Key-Value, Document, Column family stores, and graph databases.
Which one will be the best fit can be determined answering the question above.
There are ready to use stack that may really help to start with your project:
Elasticsearch that would be your Database (it has a REST API that you can use to write them to the DB and to make queries and analysis)
Kibana is a visualization tool, it will allows you to explore and visualize your data, it it quite powerful and will be more than enough for most of your needs
Logstash can centralize the data processing and help you process and save them in elasticsearch, it already support quite few sources of logs and events, and you can also write your own plugin as well.
Some people refers to them as the ELK stack.
I don't believe you should worry about the programming language you have to use at this point, try to select the tools first, sometimes the choices are limited by the tools you want to use and you can still use a mixture of languages and make the effort only if/when it make sense.
A common way to solve such a requirements is to use Amazon Redshift and the ecosystem around it.
Redshift is a peta-scale data warehouse (it can also start with giga-scale), that exposes Ansi SQL interface. As you can put as much data as you like into the DWH and you can run any type of SQL you wish against this data, this is a good infrastructure to build almost any agile and big data analytics system.
Redshift has many analytics functions, mainly using Window functions. You can calculate averages and medians, but also percentiles, dense rank etc.
You can connect almost every SQL client you want using JDBS/ODBC drivers. It can be from R, R studio, psql, but also from MS-Excel.
AWS added lately a new service for Machine Learning. Amazon ML is integrating nicely with Redshift. You can build predictive models based on data from Redshift, by simply giving an SQL query that is pulling the data needed to train the model, and Amazon ML will build a model that you can use both for batch prediction as well as for real-time predictions. You can check this blog post from AWS big data blog that shows such a scenario: http://blogs.aws.amazon.com/bigdata/post/TxGVITXN9DT5V6/Building-a-Binary-Classification-Model-with-Amazon-Machine-Learning-and-Amazon-R
Regarding visualization, there are plenty of great visualization tools that you can connect to Redshift. The most common ones are Tableau, QliView, Looker or YellowFin, especially if you don't have any existing DWH, where you might want to keep on using tools like JasperSoft or Oracle BI. Here is a link to a list of such partners that are providing free trial for their visualization on top of Redshift: http://aws.amazon.com/redshift/partners/
BTW, Redshift also provides a free trial for 2 months that you can quickly test and see if it fits your needs: http://aws.amazon.com/redshift/free-trial/
Big Data is a tough problem primarily because it isn't one single problem. First if your original database is a normal OLTP database that is handling business transactions throughout the day, you will not want to also do your big data analysis on this system since the data-analysis you will want to do will interfere with the normal business traffic.
Problem #1 is what type of database do you want to use for data-analysis? You have many choices ranging from RDBMS, Hadoop, MongoDB, and Spark. If you go with RDBMS then you will want to change the schema to be more compliant with data-analysis. You will want to create a data warehouse with a star schema. Doing this will make many tools available to you because this method of data analysis has been around for a very long time. All of the other "big data" and data analysis databases do not have the same level of tooling available, but they are quickly catching up. Each one of these will require research on which one you will want to use based on your problem set. If you have big batches of data RDBMS and Hadoop will be good. If you have streaming types of data then you will want to look at MongoDB and Spark. If you are a Java shop then RDBMS, Hadoop or Spark. If you are JavaScript MongoDB. If you are good with Scala then Spark.
Problem #2 is getting your data from your transactional database into your big data storage. You will need to find a programming language that has libraries to talk to both databases and you will have to decide when and where you will be moving this data. You can use Python, Java or Ruby to do this work.
Problem #3 is your UI. If you decide to go with RDBMS then you can use many of the available tools available or you can build your own. The other data storage solutions will have tool support but it isn't as mature is that available for the RDBMS. You are most likely going to build your own here anyway because your analysts will want to have the tools built to their specifications. Java works with all of these storage mechanisms but you can probably get Python to work too. You may want to provide a service layer built in Java that provides a RESTful interface and then put a web layer in front of that service layer. If you do this, then your web layer can be built in any language you prefer.
These three languages are most commonly used for machine learning and data mining on the Server side: R, Python, SQL. If you are aiming for heavy mathematical functions and graph generation, Haskell is very popular.
I am currently working on a long term project that will need to support:
Lots of fast Read/Write operations via RESTful Services
An Analytics Engine continually reading and making sense of data
It is vital that the performance of the Analytics Engine not be affected by the volume of Reads/Writes coming from the API calls.
Because of that, I'm thinking that I may have to use a "front-end" database and some sort of "back-end" data warehouse. I would also need to have something like Elastic Search or Solr indexing the data stored in the data warehouse.
The Questions:
Is this a Recommended Setup? What would the alternative be?
If so...
I'm considering either Hive or Pig for the data-warehousing, and Elastic Search or Solr as a Search Engine. Which combination is known to work better together?
And finally...
I'm seriously considering Cassandra as the "fron-end" database. What is the relation between Cassandra and Hadoop, and when/why should they be put to work together instead of having just Cassandra?
Please note, my intention is NOT to start a debate about which of these is better, but to understand how can they be put to work better more efficiently. If it makes any difference, the main code is being written in Scala and Java.
I truly appreciate your help. I'm basically learning as I go and all comments will be very helpful.
Thank you.
First let's talk about Cassandra
This is a NoSQL database with eventual consistency which basically means for you that different nodes into a Cassandra cluster may have different 'snapshots' of data in the case that there is an inter cluster communication/availability problem. The data eventually will be consistent however.
Since you consider it as a 'frontend' database what you need to understand is how you will model your data. Cassandra can take advantage of indexes however you still need to defined upfront your access pattern.
Normally there is no relation between Cassandra and Hadoop (except that both are written in Java) however the Datastax distribution (enterprise version) has Hadoop support directly from Cassandra.
As a general workflow you will read/write most current data (let's say - last 24 hours) from your 'small' database that enough performance (Cassandra has excellent support for it) and you would move anything older than X (older than 24 hours) to a 'long term storage' such as Hadoop where you can run all sort of Map Reduce etc.
In regards to the text search it really depends what you need - Elastic Search is sort of competition to Solr and reverse. You can see yourself how they compare here http://solr-vs-elasticsearch.com/
As for your third question,
I think Cassandra is more like a database to save data.
Hadoop is responsible to provide a compution model to let you analyze your large data in
Cassandra.
So it is very helpful to combine Cassandra with Hadoop.
Also have other ways you can consider, such as combine with mongo and hadoop,
for mongo has support mongo-connector between hadoop and it's data.
Also if you have some search requirements , you can also use solr, directly generated index from mongo.
I'm lost in: Hadoop, Hbase, Lucene, Carrot2, Cloudera, Tika, ZooKeeper, Solr, Katta, Cascading, POI...
When you read about the one you can be often sure that each of the others tools is going to be mentioned.
I don't expect you to explain every tool to me - sure not. If you could help me to narrow this set for my particular scenario it would be great. So far I'm not sure which of the above will fit and it looks like (as always) there are more then one way of doing what's to be done.
The scenario is: 500GB - ~20 TB of documents stored in Hadoop. Text documents in multiple formats: email, doc, pdf, odt. Metadata about those documents stored in SQL db (sender, recipients, date, department etc.) Main source of documents will be ExchangeServer (emails and attachments), but not only. Now to the search: User needs to be able to do complex full-text searches over those documents. Basicaly he'll be presented with some search-config panel (java desktop application, not webapp) - he'll set date range, document types, senders/recipients, keywords etc. - fire the search and get the resulting list of the documents (and for each document info why its included in search results i.e. which keywords are found in document).
Which tools I should take into consideration and which not? The point is to develop such solution with only minimal required "glue"-code. I'm proficient in SQLdbs but quite uncomfortable with Apache-and-related technologies.
Basic workflow looks like this: ExchangeServer/other source -> conversion from doc/pdf/... -> deduplication -> Hadopp + SQL (metadata) -> build/update an index <- search through the docs (and do it fast) -> present search results
Thank you!
Going with solr is a good option. I have used it for similar scenario you described above. You can use solr for real huge data as its a distributed index server.
But to get the meta data about all of these documents formats you should be using some other tool. Basically your workflow will be this.
1) Use hadoop cluster to store data.
2) Extract data in hadoop cluster using map/redcue
3) Do document identification( identify document type)
4) Extract meta data from these document.
5) Index metadata in solr server, store other ingestion information in database
6) Solr server is distributed index server, so for each ingestion you could create a new shard or index.
7) When search is required search on all the indexs.
8) Solr supports all the complex searches , so you don't have to make your own search engine.
9) It also does paging for you as well.
We've done exactly this for some of our clients by using Solr as a "secondary indexer" to HBase. Updates to HBase are sent to Solr, and you can query against it. Typically folks start with HBase, and then graft search on. Sounds like you know from the get go that search is what you want, so you can probably embed the secondary indexing in from your pipeline that feeds HBase.
You may find though that just using Solr does everything you need.
Another project to look at is Lily, http://www.lilyproject.org/lily/index.html, which has already done the work of integrating Solr with a distributed database.
Also, I do not see why you would not want to use a browser for this application. You are describing exactly what faceted search is. While you certainly could set up a desktop app that communicates with the server (parses JSON) and displays the results in a thick client GUI, all of this work is already done for you in the browser. And, Solr comes with a free faceted search system out of the box: just follow along the tutorial.
Going with Solr (http://lucene.apache.org/solr) is a good solution, but be ready to have to deal with some non-obvious things. First is planning your indexes properly. Multiple terabytes of data will almost definitely need multiple shards on Solr for any level of reasonable performance and you'll be in charge of managing those yourself. It does provide distributed search (doing the queries off multiple shards), but that is only half the battle.
ElasticSearch (http://www.elasticsearch.org/) is another popular alternative, but i don't have much experience with it regarding scale. It uses the same Lucene engine so i'd expect the search feature-set to be similar.
Another type of solution is something like SenseiDB - open sourced from LinkedIn - which gives the full-text search functionality (also Lucene-based) as well as proven scale for large amounts of data:
http://senseidb.com
They've definitely done a lot of work on search over there and my casual use of it is pretty promising.
Assuming all your data is already in Hadoop, you could write some custom MR jobs that pull the data in a consistent schema-friendly format into SenseiDB. SenseiDB already provides a Hadoop MR indexer which you can look at.
The only caveat is it is a little more complex to setup, but will save you with the scaling issues many times over - especially around indexing performance and faceting functionality. It also provides clustering support if HA is important to you - which is still in Alpha for Solr (Solr 4.x is alpha atm).
Hope that helps and good luck!
Update:
I asked a friend who is more versed in ElasticSearch than me and it does have the advantage of clustering and rebalancing based on the # of machines and shards you have. This is a definite win over Solr - especially if you're dealing with TBs of data. The only downside is the current state of documentation on ElasticSearch leaves a lot to be desired.
As a side note, you can't say the documents are stored in Hadoop, they are stored in a distributed file system (most probably HDFS since you mentioned Hadoop).
Regarding searching/indexing: Lucene is the tool to use for your scenario. You can use it for both indexing and searching. It's a java library. There is also an associated project (called Solr) which allows you to access the indexing/searching system through WebServices. So you should also take a look at Solr as it allows the handling of different types of documents (Lucene puts the responsability of interpreting the document (PDF, Word, etc) on your shoulders but you, probably, can already do that)
I would like to be able to search a CouchDB database using Solr. Are there any projects that provide such an integration?
I am also aware of CouchDB-Lucene. Is there a way to hook Solr into that?
Thanks!
It would make more sense to roll your own, given how wasy it easy. First you need to decide what kind of SOLR schema to use and how to map your CouchDB documents onto that schema. Then simple iterate through all the documents in a db Pagination in CouchDB? and generate SOLR <add> documents.
People do this all the time with all kinds of data sources. Since SOLR is essentially searching a single table, the hard work is often figuring out how to map your database format onto a single table. Read up on what you can do with the SOLR schema, and you may be surprised at how easy this is.
There is a CouchDB integration for ElasticSearch available, apart from feeding ElasticSearch with JSON on your own. Both work with schema-less JSON, so it's very easy to integrate them.
In terms of features, ElasticSearch would offer a comparable set to Solr (in addition to some unique features, of course.)
According to this
http://wiki.apache.org/couchdb/Related_Projects
there was a CouchDB-Solr2 project (scroll down to the end), which is no longer maintained.